View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15040_low_5 (Length: 628)

Name: NF15040_low_5
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15040_low_5
NF15040_low_5
[»] chr5 (5 HSPs)
chr5 (18-327)||(10330113-10330421)
chr5 (495-614)||(10330419-10330538)
chr5 (146-219)||(35518280-35518353)
chr5 (83-131)||(16552782-16552830)
chr5 (85-133)||(26525979-26526027)
[»] chr3 (4 HSPs)
chr3 (146-220)||(53653605-53653679)
chr3 (173-221)||(24781185-24781233)
chr3 (80-131)||(42133612-42133663)
chr3 (364-433)||(24781379-24781448)
[»] chr1 (1 HSPs)
chr1 (80-130)||(44632438-44632488)
[»] chr8 (2 HSPs)
chr8 (151-205)||(13465995-13466049)
chr8 (317-426)||(28827249-28827358)
[»] chr4 (1 HSPs)
chr4 (76-128)||(44598060-44598112)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 10330113 - 10330421
Alignment:
Q  18 tatgctagtatacctcctttcctttttcaaaggtttttcaggtattattcttaaaattgagacttgtaaaattcattgggttcattgagacaaagtgtgt 117  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10330113 tatgctagtatacctcctttccttttttaaaggtttttcagatatcattcttaaaattgagacttgtaaaattcgttgggttcattgagacaaagtgtgt 10330212  T
Q  118 ttacctaaagagaaggaaggtgggggagtttacaagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttg 217  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10330213 ttacctaaagagaaggaaggtgggg-agtttacaagttttttatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttg 10330311  T
Q  218 gtgtcacctttcggctcataaacatgggcttctaattagggaagtggttagagagagcatcacaaattcgatttggtggaagaatatttttagcagtatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||    
T  10330312 gtgtcacctttcggctcataaacatgggcttctaattagggaagtggttagagagagcatcacaaattcaatttggtggaagaatatttttagaattatg 10330411  T
Q  318 agaggtgatg 327  Q
    ||||||||||    
T  10330412 agaggtgatg 10330421  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 495 - 614
Target Start/End: Original strand, 10330419 - 10330538
Alignment:
Q  495 atgtagttaggtattggtgttgagggggcttgttagctttggagaagaaatttgtttgtttgtgaggttgaattggtggagtgtagggttttattgtgta 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10330419 atgtagttaggtattggtgttgagggggcttgttagctttggagaagaaatttgtttgtttgtgaggttgaattggtggagtgtagggttttattgtcta 10330518  T
Q  595 acatttcattgcagaataat 614  Q
    | |||||||||||| |||||    
T  10330519 atatttcattgcaggataat 10330538  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 35518353 - 35518280
Alignment:
Q  146 tttacaagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttggt 219  Q
    |||| |||||||||||||   | ||||| ||||||||||||||| ||||||||||||||| ||||  |||||||    
T  35518353 tttaaaagtttttaatttacatattttagggaagtggtgttggatgttaaggagggagaatgatggattttggt 35518280  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 16552830 - 16552782
Alignment:
Q  83 gtaaaattcattgggttcattgagacaaagtgtgtttacctaaagagaa 131  Q
    |||||||||||||||||||||   ||||||||| ||||| |||||||||    
T  16552830 gtaaaattcattgggttcatttgaacaaagtgtctttacataaagagaa 16552782  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 26525979 - 26526027
Alignment:
Q  85 aaaattcattgggttcattgagacaaagtgtgtttacctaaagagaagg 133  Q
    |||||||||| ||| || ||| |||||||||||||||| ||||||||||    
T  26525979 aaaattcattaggtccactgaaacaaagtgtgtttaccaaaagagaagg 26526027  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 53653605 - 53653679
Alignment:
Q  146 tttacaagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttggtg 220  Q
    |||| ||||||||||||| |||||||||   |||||||||||||| |||| ||||||||||  ||||||||||||    
T  53653605 tttaaaagtttttaatttagctcttttagataagtggtgttggagattaaagagggagaaatgtgagttttggtg 53653679  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 24781185 - 24781233
Alignment:
Q  173 aaggaagtggtgttggaggttaaggagggagaaagatgagttttggtgt 221  Q
    |||||||||||||  |||||||||||  |||||||||||||||||||||    
T  24781185 aaggaagtggtgtaagaggttaaggaatgagaaagatgagttttggtgt 24781233  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 42133612 - 42133663
Alignment:
Q  80 cttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaagagaa 131  Q
    ||||||||| |||||  |||||||| |||||| |||||||||||||||||||    
T  42133612 cttgtaaaactcattaagttcattgggacaaaatgtgtttacctaaagagaa 42133663  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 433
Target Start/End: Original strand, 24781379 - 24781448
Alignment:
Q  364 ttaataaaatagaaaatggtagtaagacgttgttttcacacgagtcgtggctagatggggaggtggtaaa 433  Q
    |||| |||||||||||||||||| |  ||||||  |  || ||||||||||||| |||||||||||||||    
T  24781379 ttaagaaaatagaaaatggtagtgaagcgttgtcctggcatgagtcgtggctaggtggggaggtggtaaa 24781448  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 44632438 - 44632488
Alignment:
Q  80 cttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaagaga 130  Q
    ||||||||||| || ||||  ||||||||||||||||||||||||||||||    
T  44632438 cttgtaaaattgatcgggtctattgagacaaagtgtgtttacctaaagaga 44632488  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 13466049 - 13465995
Alignment:
Q  151 aagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaa 205  Q
    ||||||||||||| ||  ||||| ||||||||||||||||||||| ||| |||||    
T  13466049 aagtttttaatttagccattttagggaagtggtgttggaggttaaagagtgagaa 13465995  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 426
Target Start/End: Complemental strand, 28827358 - 28827249
Alignment:
Q  317 gagaggtgatgagataagtggagggagatgatttgtgtataatgttattaataaaatagaaaatggtagtaagacgttgttttcacacgagtcgtggcta 416  Q
    ||||||||| ||| | | |||||||||||| ||| || ||||||||| ||| ||||||| |||| ||| ||| || |||||||  |||| ||||| | ||    
T  28827358 gagaggtgacgaggtgaatggagggagatggtttttggataatgttactaagaaaataggaaattgtactaatactttgttttggcacgtgtcgttgtta 28827259  T
Q  417 gatggggagg 426  Q
    |||| |||||    
T  28827258 gatgaggagg 28827249  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 44598112 - 44598060
Alignment:
Q  76 gagacttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaaga 128  Q
    |||||| |||||||| ||||||||||||  |||||||||||||| | ||||||    
T  44598112 gagactcgtaaaatttattgggttcattaggacaaagtgtgtttgcataaaga 44598060  T

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