View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_low_6 (Length: 604)
Name: NF15040_low_6
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 34902040 - 34902433
Alignment:
| Q |
13 |
aatatataccaataaactagatgtgtatgttatctcctttcaagannnnnnnnnnnnnnnnnnnngacaaaatcctttcatgaaagatgtaattgtatag |
112 |
Q |
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| T |
34902040 |
aatatataccaataaactagatgtgtatgttatctcctttcaagatttttttatttttactttttgacaaaatcctttcatgaaagatgtaattgtatag |
34902139 |
T |
|
| Q |
113 |
attaagagaattacatgcgaagggaagcaaccacatgccacttatcataagttatgatagaagcacaaattacaatttcccgaagacaatatcctaactc |
212 |
Q |
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| T |
34902140 |
attaagagaattacatgcgaagggaagcaaccacatgccacttatcataagttatgatagaagcacaaattacaatttcccgaagacaatatcctaactc |
34902239 |
T |
|
| Q |
213 |
gatccaccatgtgtgttaaataaaaattgctaccgaaaatccgatattgaaggcaatgtggtaatcatgttgttttgcgaatcaaagattatgaaacgaa |
312 |
Q |
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| T |
34902240 |
gatccaccatgtgtgttaaataaaaattgctaccgaaaatccgatattgaaggcaatgtggtaatcatgttgttttgcgaatcaaagattatgaaacgag |
34902339 |
T |
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| Q |
313 |
gtcttacaacgcacatcaactcaatatgtagaaaagtaaaatcaaaaattgtgcatcaattattaaaaccctaacgagaagcattgtccaaggt |
406 |
Q |
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| T |
34902340 |
gtcttacaacttacatcaactcaatatgtagaaaaataaaatcaaaaattgtgcatcaattattaaaaccctaacgagaagcattgtccaaggt |
34902433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 468772 - 468810
Alignment:
| Q |
81 |
aaaatcctttcatgaaagatgtaattgtatagattaaga |
119 |
Q |
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| T |
468772 |
aaaatccttttaagaaagatgtaattgtatagattaaga |
468810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 269 - 580
Target Start/End: Complemental strand, 30661550 - 30661241
Alignment:
| Q |
269 |
tgtggtaatcatgttgttttgcgaatcaaagattatgaaacgaagtcttacaacgcacatcaactcaatatgtagaaaagtaaaatcaaaaa-ttgtgca |
367 |
Q |
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||||||||| ||||| ||||| ||||| ||||||| ||||||| |||||||||| || ||||| ||||| |||||||| |||||| ||||| ||| ||| |
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| T |
30661550 |
tgtggtaattatgttattttgtgaatcgaagattacgaaacgaggtcttacaacacaaatcaattcaatccgtagaaaaataaaataaaaaaattgggca |
30661451 |
T |
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| Q |
368 |
tcaattattaaaaccctaacgagaagcattgtcc-aaggttgtaaagaggaaaaattgaatttcgagaattgaaaaatcaaaagtgttgagagacag--- |
463 |
Q |
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| T |
30661450 |
ccaatta----aaccctaacaagaagctttgtcagaaggttgtaaacatgaaaaattgactttaaaaaattgaaaaatcaaaaaagttgagagacagatg |
30661355 |
T |
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| Q |
464 |
----agtacaaatagattagaagaattggaaatacacatgcttaggccttagagatcaaagaacctcaccgcaacgatcgttatatttaatcatagccat |
559 |
Q |
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| T |
30661354 |
agataatacagagagaatagaagaattggaaatacacatg-------tttagagatgaaagaacctcaccgtaacaattattacaattaatcatagtcat |
30661262 |
T |
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| Q |
560 |
caattaccgttaaaatgaagg |
580 |
Q |
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||||| |||||||||||| |
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| T |
30661261 |
taattattattaaaatgaagg |
30661241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 30661656 - 30661596
Alignment:
| Q |
78 |
gacaaaatcctttcatgaaagatgtaattgtatagattaagagaattacatgcgaagggaa |
138 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||| |
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| T |
30661656 |
gacaaaatcctttcatgaaagaagtaattgtatagattaagataattagatgtgaagggaa |
30661596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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