View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15040_low_7 (Length: 532)
Name: NF15040_low_7
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 28864198 - 28864707
Alignment:
| Q |
19 |
atagaatcacgctgggatgaattaatcggtgagatgccagctaaagtttgttatcctgcacttgaaaatcatgagtggaggatcataacaggctgtgacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28864198 |
atagaatcacgctgggatgaattaatcggtgagatgccagctaaagtttgttatcctgcacttgaaaatcatgagtggaggatcataacaggctgtgacc |
28864297 |
T |
|
| Q |
119 |
ccaaaaatactagatggagttaccataatggaggatcttggccagttcttttatggcttctcaccgcggcttcgatcaagactggaagacagaagattgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28864298 |
ccaaaaatactagatggagttaccataatggaggatcttggccagttcttttatggcttctcaccgcggcttcgatcaagactggaagacagaagattgc |
28864397 |
T |
|
| Q |
219 |
agaatgcgcagttaaaattgctgagaccagattgctgaaggacaattggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctagg |
318 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28864398 |
agaacacgcacttaaaattgctgagaccagattgctgaaggacaattggccctaatattatgatggaaagctaggtagatgtattgggaagcaagctagg |
28864497 |
T |
|
| Q |
319 |
aaatgccaaacttggtctgttgctggttacttagttgctaagctgatgatggaggatccattacatttgcgtatggtggccttcgaggaagataaactcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28864498 |
aaatgccaaacttggtctgttgctggttacttagttgctaagctgatgatggaggatccattacatttgcgtatggtggccttcgaggaagataaactcc |
28864597 |
T |
|
| Q |
419 |
taagtcctcaacacagaagatcaaaatcatgcccatggtgatgaggtaaatgcaatggaaaaagttcaagatgaaacactgtaaatgaaacactgcaaag |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
28864598 |
taagtcctcaacacagaagatcaaaatcatgcccatggtgatgaggtaaatgcaatggaaaaagtgcaaggtgaaacactgtaaatgaaacactgcaaag |
28864697 |
T |
|
| Q |
519 |
aattatctac |
528 |
Q |
| |
|
|||||||||| |
|
|
| T |
28864698 |
aattatctac |
28864707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 55111649 - 55111505
Alignment:
| Q |
19 |
atagaatcacgctgggatgaattaatcggtgagatgccagctaaagtttgttatcctgcacttgaaaatcatgagtggaggatcataacaggctgtgacc |
118 |
Q |
| |
|
||||||||||| ||||| |||||||| || |||||||| | |||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
55111649 |
atagaatcacggtgggaagaattaattggggagatgcctgtcaaagtttgttatccagcccttgaaaatcatgaatggaggatcataacaggatgtgacc |
55111550 |
T |
|
| Q |
119 |
ccaaaaatactagatggagttaccataatggaggatcttggccag |
163 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
55111549 |
caaaaaatactagatggagttaccacaatgggggatcttggccag |
55111505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 55111013 - 55110899
Alignment:
| Q |
233 |
aaattgctgagaccagattgctgaaggacaattggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttg |
332 |
Q |
| |
|
||||||| ||| ||||| |||| || ||||| ||||| || ||||||||||||| | ||| |||||||||| ||||| ||| | ||||||||||| || |
|
|
| T |
55111013 |
aaattgccgaggccagactgctaaaagacaactggccggagtattatgatggaacacatggtcgatacattggaaagcaggctcgaaaatgccaaacctg |
55110914 |
T |
|
| Q |
333 |
gtctgttgctggtta |
347 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
55110913 |
gtctattgctggtta |
55110899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 43229995 - 43229941
Alignment:
| Q |
109 |
ggctgtgaccccaaaaatactagatggagttaccataatggaggatcttggccag |
163 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43229995 |
ggctgtgatcccaaaaataccagatggagttaccataatggaggatcttggccag |
43229941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 163
Target Start/End: Complemental strand, 43220887 - 43220857
Alignment:
| Q |
133 |
tggagttaccataatggaggatcttggccag |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43220887 |
tggagttaccataatggaggatcttggccag |
43220857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 43229488 - 43229379
Alignment:
| Q |
265 |
tggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttggtctgttgctggttacttagttgctaagctga |
364 |
Q |
| |
|
|||||||||||||||||||| || || || ||||| ||||||| || || || |||| |||||| |||||| |||| ||||| || || || ||| ||| |
|
|
| T |
43229488 |
tggcctgaatattatgatggtaaacttggaagatatgttgggaaacaggcaagaaaataccaaacatggtctattgcgggttatttggtggcaaagatga |
43229389 |
T |
|
| Q |
365 |
tgatggagga |
374 |
Q |
| |
|
|| ||||||| |
|
|
| T |
43229388 |
tgctggagga |
43229379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 377
Target Start/End: Complemental strand, 43220414 - 43220302
Alignment:
| Q |
265 |
tggcctgaatattatgatggaaagctaggtagatacattgggaagcaagctaggaaatgccaaacttggtctgttgctggttacttagttgctaagctga |
364 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| |||| | |||| || |||| |||||| |||||| |||| ||||| | ||| ||||| ||| |
|
|
| T |
43220414 |
tggcctgaatattatgatggtaagcttggaagatatgttggtagaaaagcaagaaaataccaaacatggtctattgcaggttatctggtttctaagatga |
43220315 |
T |
|
| Q |
365 |
tgatggaggatcc |
377 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
43220314 |
tgctggaggatcc |
43220302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University