View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15041_high_1 (Length: 546)

Name: NF15041_high_1
Description: NF15041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15041_high_1
NF15041_high_1
[»] chr3 (8 HSPs)
chr3 (60-527)||(33389413-33389884)
chr3 (70-211)||(52254515-52254659)
chr3 (60-201)||(32304945-32305087)
chr3 (60-201)||(42540875-42541017)
chr3 (60-189)||(34817571-34817701)
chr3 (97-201)||(17514402-17514506)
chr3 (50-117)||(54834164-54834233)
chr3 (60-117)||(52255283-52255341)
[»] chr1 (13 HSPs)
chr1 (60-527)||(52750394-52750876)
chr1 (70-211)||(24508446-24508590)
chr1 (60-201)||(36142355-36142497)
chr1 (60-201)||(47112334-47112476)
chr1 (50-121)||(31697347-31697420)
chr1 (102-201)||(49652666-49652758)
chr1 (60-117)||(24509217-24509275)
chr1 (50-107)||(50124366-50124425)
chr1 (70-121)||(968216-968268)
chr1 (70-117)||(29021827-29021875)
chr1 (70-117)||(52751326-52751374)
chr1 (59-117)||(968154-968213)
chr1 (72-119)||(968920-968968)
[»] chr2 (10 HSPs)
chr2 (62-282)||(3093383-3093603)
chr2 (314-527)||(3093602-3093817)
chr2 (72-201)||(28189700-28189830)
chr2 (71-201)||(8029683-8029814)
chr2 (60-201)||(20685872-20686013)
chr2 (60-201)||(19298244-19298386)
chr2 (60-201)||(40468765-40468911)
chr2 (50-120)||(10708363-10708435)
chr2 (50-121)||(12602341-12602415)
chr2 (50-121)||(8892808-8892882)
[»] chr6 (6 HSPs)
chr6 (70-211)||(901660-901802)
chr6 (60-201)||(12261165-12261307)
chr6 (60-201)||(16146320-16146462)
chr6 (60-201)||(27129084-27129226)
chr6 (60-198)||(20746300-20746440)
chr6 (70-117)||(902511-902559)
[»] chr7 (13 HSPs)
chr7 (70-211)||(17236300-17236444)
chr7 (63-198)||(8684963-8685099)
chr7 (60-201)||(17278641-17278783)
chr7 (263-367)||(30828801-30828906)
chr7 (377-502)||(30829338-30829463)
chr7 (50-117)||(14682749-14682818)
chr7 (50-117)||(30474922-30474991)
chr7 (60-144)||(30765909-30765994)
chr7 (63-120)||(25443245-25443304)
chr7 (64-119)||(18298070-18298126)
chr7 (60-117)||(17238394-17238452)
chr7 (161-201)||(30765989-30766029)
chr7 (50-121)||(18297386-18297459)
[»] chr8 (2 HSPs)
chr8 (60-201)||(13462347-13462489)
chr8 (102-157)||(9319070-9319125)
[»] chr5 (7 HSPs)
chr5 (60-201)||(6794456-6794598)
chr5 (72-201)||(23082793-23082922)
chr5 (94-201)||(22165857-22165964)
chr5 (50-117)||(38385102-38385171)
chr5 (50-117)||(13824397-13824467)
chr5 (50-117)||(24041971-24042041)
chr5 (60-99)||(38385577-38385617)
[»] chr4 (11 HSPs)
chr4 (70-211)||(50281916-50282060)
chr4 (90-211)||(13631094-13631215)
chr4 (60-201)||(9087010-9087153)
chr4 (102-201)||(40680734-40680833)
chr4 (70-168)||(44182799-44182899)
chr4 (50-117)||(45044604-45044673)
chr4 (60-117)||(44183576-44183634)
chr4 (60-117)||(50282688-50282746)
chr4 (60-117)||(13630332-13630390)
chr4 (60-121)||(26280314-26280376)
chr4 (60-99)||(45045065-45045105)
[»] scaffold0202 (1 HSPs)
scaffold0202 (60-201)||(21882-22024)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 60 - 527
Target Start/End: Original strand, 33389413 - 33389884
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaata--accaatttttcaattaaaaaacatccctttcaatcaaaacaacacaa 156  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||  || |||||||| |||||||| ||||||||||||||||||||||||||    
T  33389413 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaatataactaatttttccattaaaaa-catccctttcaatcaaaacaacacaa 33389511  T
Q  157 tttctcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaannnnnnnnaaatccaaaactactctccaccatgacctgcgcacta 256  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||  ||||||||||||    
T  33389512 tttttcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaattttttttaaatcaaaaactactctccaccaccacctgcgcacta 33389611  T
Q  257 ctcgcctttgcttcatttcctgctaatatctcctccctaattcttcctcacacccccaaccaactactcactcttctaacaaactcctccctataggact 356  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33389612 ctcacctttgcttcatttcctgctaatatctcctccctaattcttctccacacccccaactaactactcactcttctaacaaactcctccctataggact 33389711  T
Q  357 cttcgctactgttcgttgttgttgtcgttgacagaagcaacaaatcaagctcaatttcctgttcctcttcttc-tttgggctcgcaggagcagtctcatt 455  Q
    || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  33389712 ctccgctactg-tcgttgttgttgtcgttgtcagaagcaacaaatcaagctcaatttcttgttcctcttcttctttttggctcgcaggagcagtctcatt 33389810  T
Q  456 cgatgagtctctcaccgccggcgaattttagtcctcggagaac--acaaaacaaaaattaccacaagcctcacc 527  Q
     ||||||||||||||| ||||||| || |||||| | ||||||  | |||| |||||| |||||||||||||||    
T  33389811 tgatgagtctctcaccaccggcgagttctagtccccagagaacataaaaaaaaaaaatcaccacaagcctcacc 33389884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 52254515 - 52254659
Alignment:
Q  70 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 166  Q
    |||||||||||||||||  |   ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  52254515 tcaaatctataaacatataatccatttcataactcaatcaataaccaattgttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 52254614  T
Q  167 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 211  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  52254615 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 52254659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 32305087 - 32304945
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  32305087 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 32304988  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  32304987 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 32304945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 42541017 - 42540875
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||  ||||||||| |||||| ||||||    
T  42541017 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatttctttcaatctaaacaatacaatt 42540918  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  42540917 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 42540875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 34817571 - 34817701
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||  ||| |  |||||| ||| ||||| |||||||||||||    
T  34817571 atcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttcattcatgaacatctcttccaatctaaacaacacaatt 34817670  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaa 189  Q
    |||||||||||||||| ||||||||||||||    
T  34817671 tctcaatctccctaaagcaaatcaaccaaaa 34817701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 17514506 - 17514402
Alignment:
Q  97 aactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttat 196  Q
    |||| ||||||||||||||||||| ||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  17514506 aacttaatcaataaccaatttttccattcataaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 17514407  T
Q  197 atcta 201  Q
    |||||    
T  17514406 atcta 17514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 54834164 - 54834233
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  54834164 tctttttcatcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 54834233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 52255341 - 52255283
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||    
T  52255341 atcatcttcatcatatctataaacataatcaatttcataactcaatcaacaaccaattt 52255283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 60 - 527
Target Start/End: Original strand, 52750394 - 52750876
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaa-catccctttcaatcaaaacaacacaat 157  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  52750394 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaatttttccattaaaaaaacatccctttcaatcaaaacaacacaat 52750493  T
Q  158 ttctcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaannnnnnnnaaa-tccaaaactactctccaccatgacctgcgcacta 256  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||        ||| ||||||||||||||||||||  ||||| ||||||    
T  52750494 ttctcaatcttcctaaaccaaatcaaccaaaatctttatatctaatcactacaattttttttaaaatccaaaactactctccaccaccacctgggcacta 52750593  T
Q  257 ctcgcctttgcttcatttcctgctaatatctcctccctaattcttcctcacacccccaaccaactactcactcttctaacaaactcctccctataggact 356  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52750594 ctcacctttgcttcatttcctgctaatatctcctccctaattcttcc-cacacccccaaccaactactcactcttctaacaaactcctccctataggact 52750692  T
Q  357 cttcgctactgttcgttgttgttgtcgttgacagaagcaacaaatcaagctcaat-------ttcct-------gttcctcttcttctttgggctcgcag 442  Q
    || |||||||| |||||||||||||||||| ||||||||||||||||||||||||       |||||        ||||||||||||||| |||||| ||    
T  52750693 ctccgctactg-tcgttgttgttgtcgttggcagaagcaacaaatcaagctcaattttcatgttcctcttcttctttcctcttcttcttttggctcgtag 52750791  T
Q  443 gagcagtctcattcgatgagtctctcaccgccggcgaattttagtcctcggagaacacaaaacaaaaattaccacaagcctcacc 527  Q
    ||||||||||||||||||||||||||||| ||| ||| || |||||| || |||||||||||||||||| |||||||||||||||    
T  52750792 gagcagtctcattcgatgagtctctcaccaccgacgagttctagtccccgaagaacacaaaacaaaaatcaccacaagcctcacc 52750876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 24508446 - 24508590
Alignment:
Q  70 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 166  Q
    |||||||||||||||||  |   |||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  24508446 tcaaatctataaacatataatctatttcataactcaaccaataaccaattttttcattaaaaaacatccctttcaatctaaacaacacaatttctcaatc 24508545  T
Q  167 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 211  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  24508546 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 24508590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 36142355 - 36142497
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||| ||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  36142355 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataatcaattttttgattcataaacatctctttcaatctaaacaacacaatt 36142454  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  36142455 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 36142497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 47112334 - 47112476
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  47112334 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 47112433  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    ||||||||||||| || ||||||||||||||| || |||||||    
T  47112434 tctcaatctccctgaagcaaatcaaccaaaatattcatatcta 47112476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 31697347 - 31697420
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 121  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  31697347 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcatatctcaatcaataaccaatttttca 31697420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 49652666 - 49652758
Alignment:
Q  102 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||| |||||||||||||||||||||| ||||||       ||||||||||||||||||||    
T  49652666 aatcaataaccaatttttccatttataaacatctctttcaatctaaacaacacaatttctcaatcttcctaaa-------aaccaaaatctttatatcta 49652758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 24509275 - 24509217
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  24509275 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 24509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 50124425 - 50124366
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaa 107  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  50124425 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaa 50124366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 968216 - 968268
Alignment:
Q  70 tcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 121  Q
    |||||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  968216 tcaaatttataaacataatcaatttcatatcttaatcaataaccaatttttca 968268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 29021827 - 29021875
Alignment:
Q  70 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  29021827 tcaaatctataaacaaaatcaatttcataactcaatcaacaaccaattt 29021875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 52751374 - 52751326
Alignment:
Q  70 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  52751374 tcaaatctataaacaaaatcaatttcataactcaatcaacaaccaattt 52751326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 968154 - 968213
Alignment:
Q  59 tatcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||| || |||||| |||||||||||| ||||||||| || ||||||||||||||||    
T  968154 tatcatcatcatcaaatttataaacataatcaatttcatatcttaatcaataaccaattt 968213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 968968 - 968920
Alignment:
Q  72 aaatctataaacat-aataatttcataactcaatcaataaccaattttt 119  Q
    |||||||||||||| || ||||||||| |||||||||| ||||||||||    
T  968968 aaatctataaacataaacaatttcatatctcaatcaatcaccaattttt 968920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 9e-93; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 62 - 282
Target Start/End: Original strand, 3093383 - 3093603
Alignment:
Q  62 catcttcgtcaaatctataaacataataatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttct 161  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  3093383 catcttcatcaaatctataaacataataatttcataactcaatcaataaccaatttttccattaaaaaatatccctttcaatcaaaacaacacaatttat 3093482  T
Q  162 caatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaannnnnnnnaaatccaaaactactctccaccatgacctgcgcactactcgc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||| |    
T  3093483 caatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaattttttttaaatccaaaactactctccaccatcacctgcgcactactcac 3093582  T
Q  262 ctttgcttcatttcctgctaa 282  Q
    |||||||||||||||||||||    
T  3093583 ctttgcttcatttcctgctaa 3093603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 314 - 527
Target Start/End: Original strand, 3093602 - 3093817
Alignment:
Q  314 aaccaactactcactcttctaacaaactcctccctataggactcttcgctactgt--tcgttgttgttgtcgttgacagaagcaacaaatcaagctcaat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||| || |||||||||||||||||||||||||||||||||||    
T  3093602 aaccaactactcactcttctaacaaactcctccctataggactctctgctactgtcatcgtcgtcgttgtcgttgacagaagcaacaaatcaagctcaat 3093701  T
Q  412 ttcctgttcctcttcttctttgggctcgcaggagcagtctcattcgatgagtctctcaccgccggcgaattttagtcctcggagaacacaaaacaaaaat 511  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||||||||    
T  3093702 ttcctgttcctcttcttcttttggctcgcatgagcagtctcattcgatgagtctctcaccaccggtgagttctagtcctcggagaacacaaaacaaaaat 3093801  T
Q  512 taccacaagcctcacc 527  Q
     |||||||||||||||    
T  3093802 caccacaagcctcacc 3093817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 28189700 - 28189830
Alignment:
Q  72 aaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccc 170  Q
    |||| |||||||||||| |||||||||||| ||||||||| ||||||||  ||| | ||||||| ||||||||| |||||||||||||||||||||||||    
T  28189700 aaatatataaacataatcaatttcataacttaatcaataatcaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaatctccc 28189799  T
Q  171 taaaccaaatcaaccaaaatctttatatcta 201  Q
    |||| |||||||||||||||||| |||||||    
T  28189800 taaagcaaatcaaccaaaatcttcatatcta 28189830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 8029814 - 8029683
Alignment:
Q  71 caaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctcc 169  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| | ||||||||||||||||||||||    
T  8029814 caaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctatacaacacaatttctcaatctcc 8029715  T
Q  170 ctaaaccaaatcaaccaaaatctttatatcta 201  Q
     |||| |||||||||||||||||| |||||||    
T  8029714 ataaagcaaatcaaccaaaatcttcatatcta 8029683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 20685872 - 20686013
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | |||||||  |||||||| |||||||||||||    
T  20685872 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctatttcaatctaaacaacacaatt 20685971  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||| ||||||| |||||||    
T  20685972 tctcaatctccctaaagcaaatcaacc-aaatcttcatatcta 20686013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 19298386 - 19298244
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||| ||| |||||||||| | ||||||||||||||||||  ||| | ||||||| ||||||||| | |||||||||||    
T  19298386 atcatcttcaacaaatatataaacaaaatcaatttcataatttaatcaataaccaattttttcattcataaacatctctttcaatctacacaacacaatt 19298287  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    ||||||||| |||||| |||||||||||||||||| |||||||    
T  19298286 tctcaatcttcctaaaacaaatcaaccaaaatcttcatatcta 19298244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 40468911 - 40468765
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | |||||||  |||||||| |||||||||||||    
T  40468911 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctatttcaatctaaacaacacaatt 40468812  T
Q  159 tctcaatctccc----taaaccaaatcaaccaaaatctttatatcta 201  Q
    ||||||||||||    |||| |||||||||||||||||| |||||||    
T  40468811 tctcaatctccctaattaaagcaaatcaaccaaaatcttcatatcta 40468765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 10708363 - 10708435
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttc 120  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10708363 tctttttcatcataatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaatttttc 10708435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 12602415 - 12602341
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacat-aat-aatttcataactcaatcaataaccaatttttca 121  Q
    |||||||||| || |||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  12602415 tctttttcatcattatcttcatcaaatctataaacattaatcaatttcatatctcaatcaataaccaatttttca 12602341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 8892882 - 8892808
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaatttttca 121  Q
    |||||||||| ||||||||| ||||||||||||||| |||| |||||| || ||| ||||||||| |||||||||    
T  8892882 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcgtatctccatcaataacaaatttttca 8892808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 901660 - 901802
Alignment:
Q  70 tcaaatctataaacataata-atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctc 168  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  901660 tcaaatctataaacataatctatttcataactcaatcaataaccaatttttccattaaaaaacatccctttcaatctaaacaacacaatttatcaatctc 901759  T
Q  169 cctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 211  Q
     |||||||||||||||||||||||| ||||||| |||||||||    
T  901760 tctaaaccaaatcaaccaaaatcttcatatctactcaccacaa 901802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 12261307 - 12261165
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  12261307 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 12261208  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  12261207 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 12261165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 16146320 - 16146462
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||| ||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  16146320 atcatcttcaacaaatatataaacaaaatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 16146419  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  16146420 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 16146462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 27129084 - 27129226
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||| |||||||    
T  27129084 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacatcacaatt 27129183  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    | |||||||||||||| |||||||||||||||||| |||||||    
T  27129184 tttcaatctccctaaagcaaatcaaccaaaatcttcatatcta 27129226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 20746440 - 20746300
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca-attaaaaaacatccctttcaatcaaaacaacacaat 157  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||   ||| | ||||||| ||||||||| ||||||||||||    
T  20746440 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatttttttcattcataaacatctctttcaatctaaacaacacaat 20746341  T
Q  158 ttctcaatctccctaaaccaaatcaaccaaaatctttatat 198  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  20746340 ttctcaatcttcctaaagcaaatcaaccaaaatcttcatat 20746300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 902559 - 902511
Alignment:
Q  70 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  902559 tcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 902511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 17236300 - 17236444
Alignment:
Q  70 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 166  Q
    |||||||||||||||||  |   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  17236300 tcaaatctataaacatataatccatttcataactcaatcaataaccaatttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 17236399  T
Q  167 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 211  Q
    |||||| |||||||||||||||||||| |||| || |||||||||    
T  17236400 tccctagaccaaatcaaccaaaatcttcatatatactcaccacaa 17236444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 8684963 - 8685099
Alignment:
Q  63 atcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttct 161  Q
    |||||| ||||| ||||||||||||| ||||| ||||||||||||| |||||||||||| ||| |||||||||| |||||||| ||||||||||||||||    
T  8684963 atcttcatcaaacctataaacataatcaattttataactcaatcaacaaccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttct 8685062  T
Q  162 caatctccctaaaccaaatcaaccaaaatctttatat 198  Q
    |||||||||||||||||||||||||||||||| ||||    
T  8685063 caatctccctaaaccaaatcaaccaaaatcttcatat 8685099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 17278641 - 17278783
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  17278641 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 17278740  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  17278741 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 17278783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 263 - 367
Target Start/End: Original strand, 30828801 - 30828906
Alignment:
Q  263 tttgcttcatttcctgctaatatctcctccctaattcttcctcacacccc-caaccaactactcactcttctaacaaactcctccctataggactcttcg 361  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  30828801 tttgcttcatttcctgctaacatctcctccctaattcttcctcacaccccccaaccaactactcactcttctaacaaactcctccctatagcactctccg 30828900  T
Q  362 ctactg 367  Q
    ||||||    
T  30828901 ctactg 30828906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 377 - 502
Target Start/End: Original strand, 30829338 - 30829463
Alignment:
Q  377 gttgtcgttgacagaagcaacaaatcaagctcaatttcctgttcctcttcttctttgggctcgcaggagcagtctcattcgatgagtctctcaccgccgg 476  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  30829338 gttgtcgttaacagaagcaataaatcaagctcaatttcatgttcttcttcttcttttggctcgccggagcagtctcattcgaggagtctctcaccgccgg 30829437  T
Q  477 cgaattttagtcctcggagaacacaa 502  Q
    ||| || |||||| ||||||||||||    
T  30829438 cgagttctagtccccggagaacacaa 30829463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 14682818 - 14682749
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  14682818 tctttttcatcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 14682749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 30474991 - 30474922
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    |||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  30474991 tctttttcatcatcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 30474922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 30765909 - 30765994
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatc 144  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| |||||||||    
T  30765909 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatc 30765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 25443245 - 25443304
Alignment:
Q  63 atcttcgtcaaatctataaacataa--taatttcataactcaatcaataaccaatttttc 120  Q
    |||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||||||    
T  25443245 atcttcatcaaatctataaacataaattaatttcataactcaatctataaccaatttttc 25443304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 18298126 - 18298070
Alignment:
Q  64 tcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattttt 119  Q
    ||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  18298126 tcttcatcaaatctataaacataaacaatttcatatctcaatcaataaccaattttt 18298070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 17238452 - 17238394
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||| || ||||||    
T  17238452 atcatcttcagcaaatctataaacataatcaatttcataactcaatcaacaatcaattt 17238394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 30765989 - 30766029
Alignment:
Q  161 tcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  30765989 tcaatctccctaaagcaaatcaaccaaaatcttcatatcta 30766029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 18297386 - 18297459
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataataa-tttcataactcaatcaataaccaatttttca 121  Q
    |||||||||| | ||| ||| |||||| |||||||||||| | ||||||| || ||||||||||||||||||||    
T  18297386 tctttttcatcaccatgttcatcaaatttataaacataatgagtttcatatcttaatcaataaccaatttttca 18297459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 13462347 - 13462489
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  13462347 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 13462446  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  13462447 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 13462489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 9319125 - 9319070
Alignment:
Q  102 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaat 157  Q
    ||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||    
T  9319125 aatcaataaccaattttttcattcaaaaacatccctttcaatctaaacaacacaat 9319070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 6794598 - 6794456
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  6794598 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 6794499  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  6794498 tctcaatctccctaaaacaaatcaaccaaaatcttcatatcta 6794456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 23082793 - 23082922
Alignment:
Q  72 aaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccc 170  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||||||||| |||||    
T  23082793 aaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaa-ctccc 23082891  T
Q  171 taaaccaaatcaaccaaaatctttatatcta 201  Q
    |||| |||||||||||||||||| |||||||    
T  23082892 taaagcaaatcaaccaaaatcttcatatcta 23082922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 22165964 - 22165857
Alignment:
Q  94 cataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctt 193  Q
    ||||||||||||||||||||||||| || | |||||||||| |||||| |  ||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  22165964 cataactcaatcaataaccaattttccactaaaaaaacatcactttcatttcaaacaacacaaattctcaatctccataaatcaaatcaaccaaaatctt 22165865  T
Q  194 tatatcta 201  Q
     |||||||    
T  22165864 catatcta 22165857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 38385102 - 38385171
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  38385102 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 38385171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 13824467 - 13824397
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaattt 117  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||| |||||||||||||||    
T  13824467 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 13824397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 24041971 - 24042041
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaattt 117  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||| |||||||||||||||    
T  24041971 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 24042041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 38385617 - 38385577
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataac 99  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  38385617 atcatcttcatcaaatctataaacataatcaatttcataac 38385577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 50281916 - 50282060
Alignment:
Q  70 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 166  Q
    |||||||||||||||||  |   ||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||| |||||| ||||||||||||||    
T  50281916 tcaaatctataaacatataatccatttcataactcaatcaataatcaatttttccattaaattacatccctttcaatctaaacaatacaatttctcaatc 50282015  T
Q  167 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 211  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  50282016 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 50282060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 13631215 - 13631094
Alignment:
Q  90 atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaa 189  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||| ||||||    
T  13631215 atttcataacttaatcaataaccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttatcaatctctctaaaccaaatcatccaaaa 13631116  T
Q  190 tctttatatctaatcaccacaa 211  Q
    |||| ||||||| |||||||||    
T  13631115 tcttcatatctactcaccacaa 13631094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 9087153 - 9087010
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca-attaaaaaacatccctttcaatcaaaacaacacaat 157  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||   ||| | ||||||| ||||||||| ||||||||||||    
T  9087153 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatttttttcattcataaacatctctttcaatctaaacaacacaat 9087054  T
Q  158 ttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  9087053 ttctcaatctccctaaaacaaatcaaccaaaatcttcatatcta 9087010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 40680734 - 40680833
Alignment:
Q  102 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    ||||||||| ||||||||  ||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  40680734 aatcaataatcaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 40680833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 44182799 - 44182899
Alignment:
Q  70 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 166  Q
    |||||||||||||||||  |   |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  44182799 tcaaatctataaacatataatccatttcataactcaatcaataacca-tttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 44182897  T
Q  167 tc 168  Q
    ||    
T  44182898 tc 44182899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 45044604 - 45044673
Alignment:
Q  50 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    |||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  45044604 tctttttcatcatcatcttcatcaaatatataaacataatcaatttcataactcaatcaataaccaattt 45044673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 44183634 - 44183576
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  44183634 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 44183576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 50282746 - 50282688
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  50282746 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 50282688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 13630332 - 13630390
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 117  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  13630332 atcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 13630390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 26280314 - 26280376
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 121  Q
    ||||| ||| |||||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  26280314 atcatgttcatcaaatttataaacataatgaatttcatatcttaatcaataaccaatttttca 26280376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 45045105 - 45045065
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataac 99  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  45045105 atcatcttcatcaaatctataaacataatcaatttcataac 45045065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 22024 - 21882
Alignment:
Q  60 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 158  Q
    |||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||||| |||||    
T  22024 atcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaactcaatt 21925  T
Q  159 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 201  Q
    |||||||||||||||| |||||||||||||| ||| |||||||    
T  21924 tctcaatctccctaaagcaaatcaaccaaaaccttcatatcta 21882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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