View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15041_low_2 (Length: 276)
Name: NF15041_low_2
Description: NF15041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15041_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 33226259 - 33226423
Alignment:
| Q |
104 |
gtctactaggagataaaatgttcattttgttaaaaataggggcgttctcaattcagtcaagtttt-----gtctac-tagctcaaatattttcttacttg |
197 |
Q |
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| T |
33226259 |
gtctactaggagataaaatgttcattttgttaaaaataggggcgttctcaattcagtcaagtttttaagggtatatatagctcaaatattttcttacttg |
33226358 |
T |
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| Q |
198 |
gtaatttaaaatctgcaccaatagaaatctgctttgtgatcatagtatttctcttctccctttga |
262 |
Q |
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| T |
33226359 |
gtaatttaaaatctgcacctatagaaatctgctttgtgatcatagtatttcttttctccctttga |
33226423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 33227027 - 33226962
Alignment:
| Q |
104 |
gtctactaggagataaaatgttcattttgttaaaaataggggc-gttctcaattcagtcaagtttt |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||| || | |||| ||||| ||||||||||| |
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| T |
33227027 |
gtctactaggagataaaatgttcattttgttaaaaatacggacggttcccaatttagtcaagtttt |
33226962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 10528746 - 10528693
Alignment:
| Q |
209 |
tctgcaccaatagaaatctgctttgtgatcatagtatttctcttctccctttga |
262 |
Q |
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| T |
10528746 |
tctgcaccaatagaaatctgctttgtgatcatagtatttctcttctccctttga |
10528693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 10528251 - 10528316
Alignment:
| Q |
104 |
gtctactaggagataaaatgttcattttgttaaaaataggggc-gttctcaattcagtcaagtttt |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||| || | |||| ||||| ||||||||||| |
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| T |
10528251 |
gtctactaggagataaaatgttcattttgttaaaaatacggacggttcccaatttagtcaagtttt |
10528316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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