View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_high_13 (Length: 336)
Name: NF15042_high_13
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 4933132 - 4932815
Alignment:
| Q |
1 |
aggagagacattctatgtcgccggactcgtctcatggctcaatagatgcattagatgaaacgacaaatttgcctttggggaaggacaatattaaaacatc |
100 |
Q |
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| T |
4933132 |
aggagagacattctatgtcgccggactcgtcttatggctcaatagatgcattagatgaaacgacaaatttgcctttggggaaggacaatattaaaacatc |
4933033 |
T |
|
| Q |
101 |
aaaacaaaaaatagatttagttttgaaggacgatgaccatgataaaaccaaaacatcgacaaatgtcaatacaaatacattggaaaaaattcatgaagat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4933032 |
aaaagaaaaaatagatttagttttgaaggacgatgaccatgataaaaccaaaacatcgacaaatgtcaatacaaatacattggacaaaattcatgaagat |
4932933 |
T |
|
| Q |
201 |
cgtaataaagcggtggcggttcctagtgaagaacctaagaattatgcgacgaatgtctcgtaccgttcagtcgaaagcgatatgagcaaccattcatttc |
300 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4932932 |
cataataaagcggtggtggttcctagtgaagaacctaagaattatgcgaccaatgtctcgtaccgttcagtcgaaagcgatatgagcaaccattcatttc |
4932833 |
T |
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| Q |
301 |
aatttcctatgtgagtct |
318 |
Q |
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|||||||||||||||||| |
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| T |
4932832 |
aatttcctatgtgagtct |
4932815 |
T |
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