View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15042_high_21 (Length: 279)
Name: NF15042_high_21
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_high_21 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 49974392 - 49974547
Alignment:
| Q |
124 |
gcgttgtgtatagtttctaggagtgacctagtaagcagtggttatataaaggagtcattggtggctctagtacttatatttactcttacaactcttttag |
223 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49974392 |
gcgttgtgtatagtttctaggagtcacctagtaagcagtggttatataaaggagtcattagtggctctagtacttatatttactcttacaactcttttag |
49974491 |
T |
|
| Q |
224 |
ttgtacacactctcacctctataaagtcgactgtaattaagtagtaatgaatagtt |
279 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49974492 |
ttgtacacactctcacctctataaagttgactgtaattaagtagtaatgaatagtt |
49974547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 49974269 - 49974360
Alignment:
| Q |
1 |
agaaaagctaatgttgaagtaatgctattagcactcttgtgcagctggattgttgtatatgtttaagcattcattaatatagctttgtcttt |
92 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49974269 |
agaaaagctcatgttgaaggaatgctattagcactcttgtgcagctggattgttgtatatgtttaagcattcattaatatagctttgtcttt |
49974360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University