View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_high_24 (Length: 255)
Name: NF15042_high_24
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_high_24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 54397031 - 54396777
Alignment:
| Q |
1 |
acagaacaccgtcttcgatgctaagcgtttaattggtcgtagattctccgatgaatcagttcaaaacgacatgaaactatggccgtttaaagtcgttcca |
100 |
Q |
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| T |
54397031 |
acagaacaccgtcttcgatgctaagcgtttaattggtcgtagattctccgatgaatcagttcaaaacgacatgaaactatggccgtttaaagtcgttcca |
54396932 |
T |
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| Q |
101 |
ggtcccgctgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagag |
200 |
Q |
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| T |
54396931 |
ggtcccgctgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagag |
54396832 |
T |
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| Q |
201 |
aagttgctgaagcttttcttggtcatccagtgaagaatgctgttgttactgttcc |
255 |
Q |
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| T |
54396831 |
aagttgctgaagcttttcttggtcatccagtgaagaatgctgttgttactgttcc |
54396777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 23587309 - 23587449
Alignment:
| Q |
17 |
gatgctaagcgtttaattggtcgtagattctccgatgaatcagttcaaaacgacatgaaactatggccgtttaaagtcgttccaggtcccgctgaaaaac |
116 |
Q |
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| T |
23587309 |
gatgctaagcgattaattggtaggcgatttggcgatgtttcagtacagagcgacatgaaattgtggccgttcaaggtcattcctggccctgctgacaaac |
23587408 |
T |
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| Q |
117 |
ctatgatcgttgttaattacaaaggtgaagagaagaaattt |
157 |
Q |
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| T |
23587409 |
caatgatcgtggtgaactacaaagcggaagagaagcaattt |
23587449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 17703613 - 17703654
Alignment:
| Q |
5 |
aacaccgtcttcgatgctaagcgtttaattggtcgtagattc |
46 |
Q |
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| T |
17703613 |
aacaccgtcttcgatgctaagaggttgattggtcgtagattc |
17703654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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