View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_high_5 (Length: 469)
Name: NF15042_high_5
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 262 - 451
Target Start/End: Complemental strand, 3784213 - 3784025
Alignment:
| Q |
262 |
aacaaaaataataacattttcttaactcatgtgttannnnnnncttaattcatgtgttatttacaaagtgatttatctatattgtggaatagaaaaagta |
361 |
Q |
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| T |
3784213 |
aacaaaaataataacattttcttaactcatgtgttatttttt-cttaattcatgtgttatttacaaagtgatttatctatattgtggaatagaaaaagta |
3784115 |
T |
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| Q |
362 |
agatataagagtgcatataataaatatatattgaaaaggaaaatgtagaagtggttttgtgagcacagcaattaagcaaggagcactaag |
451 |
Q |
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| T |
3784114 |
agatataagagtgcatataataaatatatattgaaaaggaaaatgtagaagtggttttgtgagcacagcaattaagcaaggagcactaag |
3784025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 3784434 - 3784333
Alignment:
| Q |
29 |
aagatcaaagatagcagcacgtgcgaaagagattgacggcatgtcataataaccaacaaagttaatggagtacttattttttcagttggataattatatc |
128 |
Q |
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| T |
3784434 |
aagatcaaagatagcagcacgtgcggaagagattgacggcatgtcataataaccaacaaagttaatggagtacttattttttcagttggataattatatc |
3784335 |
T |
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| Q |
129 |
ag |
130 |
Q |
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|| |
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| T |
3784334 |
ag |
3784333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 3784251 - 3784214
Alignment:
| Q |
207 |
agttcttataagctatgttttccacatgactaatgaat |
244 |
Q |
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| T |
3784251 |
agttcttataagctatgttttccacatcaccaatgaat |
3784214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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