View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_10 (Length: 352)
Name: NF15042_low_10
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 7191339 - 7191666
Alignment:
| Q |
17 |
cagtgccgactccatctagaacgccattaatcaatagatttagaccttcaatgcaagcttctgagctgcaagagcttcagcctctagagttggttcccac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7191339 |
cagtgccgactccatctagaacgccattaatcaatagatttagaccttcaatgcaagcttctgagctgcaagagcttcagcctctagagttggttcccac |
7191438 |
T |
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| Q |
117 |
aataatgtactctctgccaataatgctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaaaacagtagcga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7191439 |
aataatgtactctctgccaataatgctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaaaacagtagcga |
7191538 |
T |
|
| Q |
217 |
aggtaaacaacatgtatatggtaacacttacagattattaatgaggaggtccagcattcgaactctgaatgttaacaatgacatggaattattgttggtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7191539 |
aggtaaacaacatgtatatggtaacacttacagattattaatgaggaggtccagcattcgaactctgaatgttaacaatgacatggaattattgttggtg |
7191638 |
T |
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| Q |
317 |
attgtgactcaccttttccattcttctc |
344 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
7191639 |
attgtgactcaccttttccattcttctc |
7191666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 7202593 - 7202779
Alignment:
| Q |
40 |
ccattaatcaatagatttagaccttcaatgcaagcttctgagctgcaagagcttcagcctctagagttggttcccacaataatgtactctctgccaataa |
139 |
Q |
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| T |
7202593 |
ccattaatcaatagatttagactttcaatgcaatcttctgagctgcaagagcttcagcctctagagttggttcccacaataatgtactctctgccaataa |
7202692 |
T |
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| Q |
140 |
tgctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaaaacagtagcgaaggtaaacaa |
226 |
Q |
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| T |
7202693 |
ggctgttaccacatatggatccatgttcgaagccggacgcctgtcttccaagtaacctacaatcaaaacagaagcaaaggtaaacaa |
7202779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 7197700 - 7197858
Alignment:
| Q |
47 |
tcaatagatttagaccttcaatgcaagcttctgagctgcaagagcttcagcctctagagttggttcccacaataatgtactctctgccaataatgctgtt |
146 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
7197700 |
tcaatagatttagaccttcaatgcaagctactgagctgcaagaacttcggcctctagagtttgttcccacaataatgtactctctgccaataatgttgtt |
7197799 |
T |
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| Q |
147 |
accacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaa |
205 |
Q |
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|||||||||||||||||||| ||| || | | |||||||| |||||||||| |||||| |
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| T |
7197800 |
accacatatggatccatgttcgaaaccaggggcctgtcttccaagtaacctacaatcaa |
7197858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 26286841 - 26287056
Alignment:
| Q |
17 |
cagtgccgactccatctagaacgccattaatcaatagatttagaccttcaatgcaagcttctgagctgcaaga-gcttcagcctctagagttggttccca |
115 |
Q |
| |
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|||||| ||||||||||| || || |||||| ||||| |||||||||||||||| || ||||||| | | | |||||| ||||||||||||||| ||| |
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| T |
26286841 |
cagtgctgactccatctaaaatgcaattaattaataggtttagaccttcaatgcgagtttctgagattcctggtgcttcaacctctagagttggtttcca |
26286940 |
T |
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| Q |
116 |
caataatgtactctctgccaataatgctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaaaacagtagcg |
215 |
Q |
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||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| | ||| | |||| || ||||||| |||||| ||||| | |
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| T |
26286941 |
caatactgttctctctgccagtaatgctgttaccacatatggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcgga |
26287040 |
T |
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| Q |
216 |
aaggtaaacaacatgt |
231 |
Q |
| |
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|||||||||||||||| |
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| T |
26287041 |
aaggtaaacaacatgt |
26287056 |
T |
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