View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_11 (Length: 351)
Name: NF15042_low_11
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 21122196 - 21122528
Alignment:
| Q |
1 |
gtggagaagtggttgattgatgtggaaaatctcctgagagaggtggaggttcttgtggagaggacggagacagacaacaattgcttccaaggatggtttc |
100 |
Q |
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|||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
21122196 |
gtggagaagtggctgaatgatgtggaaaaactccttagagaggtggaggttcttgtacaaaggacggagacagacaacaattgcttccaaggatggtttc |
21122295 |
T |
|
| Q |
101 |
caacgtgtggacgatatcttttgtgcaaacaaatggtgcagaagatagacgcaatggggaggttcaaaggcaaaagcaaagatattgaaccattttctca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21122296 |
caacgtgtggacgatatcttttgtgcaaacaaatggtgcagaagatagacgcaatggggaggttcaaaggcaaaagcaaagatatcgaaccattttctca |
21122395 |
T |
|
| Q |
201 |
tcttgctccactaccaggtattcagtatcagtcatccgaagacttcatctattttgaatcaacaaaagtggcttatgatcaactcttgaaggcacttgag |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21122396 |
tcttgctccactaccaggtattctgtatcagtcatccgaagacttcatctattttgaatcaacaaaagtggcttatgataaactcttgaaggcacttgag |
21122495 |
T |
|
| Q |
301 |
gatgatcgcatctctataattggaatgcacgga |
333 |
Q |
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| T |
21122496 |
gatgatcgcatctctataattggactgtacgga |
21122528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 21114769 - 21115095
Alignment:
| Q |
1 |
gtggagaagtggttgattgatgtggaaaatctcctgagagaggtggaggttcttgtggagaggacggagacagacaacaattgcttccaaggatggtttc |
100 |
Q |
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||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||||| | ||||| || |||||| ||||||||| ||||||||||||| |
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| T |
21114769 |
gtggagaagtggttgattgttgtagaaaatctcttgagagaggtggatgttcttgtgcaaaggacagaaacagacgccaattgctttcaaggatggtttc |
21114868 |
T |
|
| Q |
101 |
caacgtgtggacgatatcttttgtgcaaacaaatggtgcagaagatagacgcaatggggaggttcaaaggcaaaagcaaagatattgaaccattttctca |
200 |
Q |
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||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||||| | |||||| ||||||| |||||| ||||||||||||| |
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| T |
21114869 |
caacgtgtggacggtatcttttgtgcaagcaaatggtacaaaagatagatgcgatggggaaatacaaaggtaaaagcattgatattcaaccattttctca |
21114968 |
T |
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| Q |
201 |
tcttgctccactaccaggtattcagtatcagtcatccgaagacttcatctattttgaatcaacaaaagtggcttatgatcaactcttgaaggcacttgag |
300 |
Q |
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|| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||| ||| |||||||| || |
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| T |
21114969 |
tcgtgctccactaccaggtagcaggtatcggtcatttgaagaattcatttattttgaatcaacaaaggtggcttacaatcaactattggaggcacttaag |
21115068 |
T |
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| Q |
301 |
gatgatcgcatctctataattggaatg |
327 |
Q |
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|||||| ||||||||||||| |||||| |
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| T |
21115069 |
gatgattgcatctctataataggaatg |
21115095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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