View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_12 (Length: 347)
Name: NF15042_low_12
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_12 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 27668173 - 27668321
Alignment:
| Q |
64 |
taaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggccaagacca |
163 |
Q |
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| T |
27668173 |
taaatcaacggcttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggctaagacca |
27668272 |
T |
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| Q |
164 |
tttacgttgtctacgagaaagaaaatgtaaaccaacatggttaaagcaa |
212 |
Q |
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| T |
27668273 |
tttacgttgtctacgagaaagaaaatggaaaccaacatggttaaagcaa |
27668321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 27668417 - 27668526
Alignment:
| Q |
222 |
atgcttgaatgatatgccatgcaaagacttcaacaaaggtgcaaagagcttgtttgaatgacgaatctcgaattatcggagtaacgttagttttttgaga |
321 |
Q |
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| T |
27668417 |
atgcttgaatgatatgccatgcaaaagcttcaacaaatgt--aaagagcttgtttgaatgacgaatctcaaattatcggagtaacgttagttttttgaga |
27668514 |
T |
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| Q |
322 |
ttttgtttgaag |
333 |
Q |
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| T |
27668515 |
tttagtttgaag |
27668526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 27668918 - 27668773
Alignment:
| Q |
8 |
tggacatcatcattgttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagt |
107 |
Q |
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| T |
27668918 |
tggacctcttcattgttgtgagtatgaaatatgaaccataaatcaaatatggccgttaaatcaagggcttcggtattgaggttagtgatgttggaggagt |
27668819 |
T |
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| Q |
108 |
caagataaatgatttgggtgtggagttgaaaggcgaggatcaaaag |
153 |
Q |
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| T |
27668818 |
caaggtaaatggttggagtgtggagttgaaaggtgggtatcaaaag |
27668773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 27673687 - 27673541
Alignment:
| Q |
14 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
113 |
Q |
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| T |
27673687 |
tcatcattgttgggagtatgaaaaatgaacgatgaatcaaacgtggctattaagttaagggcttcggtattgaggttagttatgttgacggagtcaagat |
27673588 |
T |
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| Q |
114 |
aaatgatttgggtgtggagttgaaaggcgaggatcaaaaggccaaga |
160 |
Q |
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| T |
27673587 |
aaatgcttggggtgttgagttgaaaggtgggtatcaaaaggctaaga |
27673541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 27668141 - 27668180
Alignment:
| Q |
14 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaa |
53 |
Q |
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| T |
27668141 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaa |
27668180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 9033 - 8954
Alignment:
| Q |
34 |
aaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
113 |
Q |
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| T |
9033 |
aaaaataaacgataaatcaaacgtggccgttaaattaacggctttggtattaaggttggtgatgttaacggaatcaagat |
8954 |
T |
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