View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_15 (Length: 306)
Name: NF15042_low_15
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 28232593 - 28232321
Alignment:
| Q |
16 |
taggtcaaatgtaatttctgttccttgccagattttaatgcatgaagccccgattaaggtttcataatattgtgctgtccttccagcacatagtcaaaag |
115 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28232593 |
taggtcaaatataatttttgttccttgccagattttaatgcatgaagccccgattaaggtttcataatattgtgctgtccttccagcacatagtcaaaag |
28232494 |
T |
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| Q |
116 |
aaatgtggaaaaagttatatggctgtaactattgtcccgaaaaaattgagaaagttctgaacatcacatcacaattttgaatatgtacataggagaaaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
28232493 |
aaatgtggaaaaagttatatggctgtaactattgtcccgaaaaaattgagaaaattctgaacatcacatctcaattatgaatatgcacataggagaaaca |
28232394 |
T |
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| Q |
216 |
tatcaactccattgcaagctacaatgctataactgattcaggctttcaagaaaatgtcacaaggagagacaac |
288 |
Q |
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| T |
28232393 |
tgtcaactccattgcagactacaatgctataactgattcaggctttcaagaaaatgtcacaaggagagacaac |
28232321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 21158360 - 21158434
Alignment:
| Q |
204 |
ataggagaaacatatcaactccattgcaagctacaatgctataactgattcaggctttcaagaaaatgtcacaag |
278 |
Q |
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| T |
21158360 |
ataggagaaatgtatcaactccatcgcaaacgacaatgctataattgattcaggctttcaagaaaatgtcacaag |
21158434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 24621008 - 24621078
Alignment:
| Q |
208 |
gagaaacatatcaactccattgcaagctacaatgctataactgattcaggctttcaagaaaatgtcacaag |
278 |
Q |
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| T |
24621008 |
gagaaacgtatcaactccattgcaaactagaatgctaaaattgattcaggctttcaagaaaatgtcacaag |
24621078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 47570193 - 47570080
Alignment:
| Q |
14 |
cataggtcaaatgtaatttctgttccttgccagattttaatgcatgaagccccgattaaggtttcataatattgtgctgtccttccagcacatagtcaaa |
113 |
Q |
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|||||||||||||| | || || |||||||||||||| ||||||| ||| ||| | |||||| |||| ||||||||||||| ||||||| || |||||| |
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| T |
47570193 |
cataggtcaaatgttacttgtgctccttgccagatttcaatgcataaagacccattcaaggtt-catattattgtgctgtccatccagcagatggtcaaa |
47570095 |
T |
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| Q |
114 |
agaaatgtggaaaaa |
128 |
Q |
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||||||||||||||| |
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| T |
47570094 |
agaaatgtggaaaaa |
47570080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 47569967 - 47569893
Alignment:
| Q |
204 |
ataggagaaacatatcaactccattgcaagctacaatgctataactgattcaggctttcaagaaaatgtcacaag |
278 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||||||| ||||| |
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| T |
47569967 |
ataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaacaag |
47569893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 28327145 - 28327085
Alignment:
| Q |
214 |
catatcaactccattgcaagctacaatgctataactgattcaggctttcaagaaaatgtca |
274 |
Q |
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| T |
28327145 |
catatcaactccattgcaaacaacaatgctagaattgattcaggctttcaagaaaatgtca |
28327085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 28240082 - 28239967
Alignment:
| Q |
159 |
aattgagaaagttctgaacatcacatcacaattttgaatatgtacataggagaaacatatcaactccattgcaagctacaatgctataactgattcaggc |
258 |
Q |
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|||||||||| | ||||||||| |||| || |||||| ||||| ||||||||| ||| | ||| |||||| |||||||||||||| |||||||| | |
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| T |
28240082 |
aattgagaaaatactgaacatctcatctcagttttgagcatgta--taggagaaatgtataagctc-attgcagactacaatgctataattgattcagac |
28239986 |
T |
|
| Q |
259 |
tttcaagaaaatgtcacaa |
277 |
Q |
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|
||||||||||||||||||| |
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| T |
28239985 |
tttcaagaaaatgtcacaa |
28239967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 21158137 - 21158322
Alignment:
| Q |
14 |
cataggtcaaatgtaa-tttctgttccttgccagattttaatgcatgaagccccgattaaggtttcataatattgtgctgtccttccagcacatagtcaa |
112 |
Q |
| |
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|||||||||||||||| ||| ||||||| |||||||| ||||||| ||| | || |||| | ||||||||| ||||||||| || |||| ||| |||| |
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| T |
21158137 |
cataggtcaaatgtaaatttgtgttcctcaccagatttcaatgcataaagactcg-ttaaagattcataataatgtgctgtctatcgagcagataatcaa |
21158235 |
T |
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| Q |
113 |
aagaaatgtggaaa----aagttatatggctgtaactattgtcccgaaaaaattgagaaagttctgaacatcacatcacaattttga |
195 |
Q |
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|||||| ||| ||| || ||||||||||| |||||| ||| ||| ||||||||||| || |||| ||| |||| || |||||| |
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| T |
21158236 |
aagaaaggtgaaaattaaaaattatatggctgaaactataatcctgaagaaattgagaaaattatgaagatcccatctcagttttga |
21158322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 4745387 - 4745312
Alignment:
| Q |
121 |
tggaaaaagttatatggctgtaactattgtcccgaaaaaattgagaaagttctgaacatcacatcacaattttgaa |
196 |
Q |
| |
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|||||||| ||||||||||| ||||||| ||| || |||| |||||| ||||||||||| |||| |||||||||| |
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| T |
4745387 |
tggaaaaaattatatggctgaaactattatccttaagaaatagagaaaattctgaacatctcatctcaattttgaa |
4745312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 1637759 - 1637698
Alignment:
| Q |
217 |
atcaactccattgcaagctacaatgctataactgattcaggctttcaagaaaatgtcacaag |
278 |
Q |
| |
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|||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
1637759 |
atcaactccattgcaaacaacaattatataattgattcaggctttcaagaaaatgtcacaag |
1637698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 1637996 - 1637895
Alignment:
| Q |
15 |
ataggtcaaatgtaatttctgttccttgccagattttaatgcatgaagccccgattaaggtttcataatattgtgctgtccttccagcacatagtcaaaa |
114 |
Q |
| |
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|||||||||||||||||| |||||| | |||||||| ||||||| ||| | || |||| | ||||||||| |||| |||| ||||||| ||| |||||| |
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| T |
1637996 |
ataggtcaaatgtaatttgtgttcc-tcccagatttcaatgcataaagactcgtttaa-gattcataataatgtgatgtctatccagcagataatcaaaa |
1637899 |
T |
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| Q |
115 |
gaaa |
118 |
Q |
| |
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|||| |
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|
| T |
1637898 |
gaaa |
1637895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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