View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15042_low_19 (Length: 285)

Name: NF15042_low_19
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15042_low_19
NF15042_low_19
[»] chr1 (51 HSPs)
chr1 (11-258)||(40812473-40812718)
chr1 (129-258)||(2971825-2971954)
chr1 (1-120)||(36511329-36511448)
chr1 (19-120)||(36509828-36509929)
chr1 (1-105)||(51726857-51726961)
chr1 (1-120)||(40811194-40811313)
chr1 (1-108)||(8092597-8092704)
chr1 (1-76)||(24516333-24516408)
chr1 (1-83)||(26803251-26803333)
chr1 (1-83)||(40110687-40110769)
chr1 (1-83)||(24517649-24517731)
chr1 (1-83)||(40109360-40109442)
chr1 (8-120)||(14764235-14764347)
chr1 (1-108)||(14169618-14169725)
chr1 (1-120)||(14765092-14765211)
chr1 (21-120)||(19464619-19464718)
chr1 (1-108)||(22167778-22167885)
chr1 (143-238)||(35684084-35684179)
chr1 (138-244)||(21278093-21278199)
chr1 (23-120)||(19466203-19466300)
chr1 (1-65)||(26801942-26802006)
chr1 (155-238)||(34531815-34531898)
chr1 (143-238)||(48973338-48973433)
chr1 (47-108)||(26054942-26055003)
chr1 (150-238)||(25889374-25889462)
chr1 (1-72)||(21246521-21246592)
chr1 (1-76)||(43807434-43807509)
chr1 (46-120)||(49141494-49141568)
chr1 (47-120)||(3979311-3979384)
chr1 (1-74)||(51725342-51725415)
chr1 (47-119)||(47560184-47560256)
chr1 (52-200)||(16217490-16217636)
chr1 (1-76)||(30743086-30743161)
chr1 (1-76)||(38280849-38280924)
chr1 (1-76)||(43808563-43808638)
chr1 (47-238)||(48934991-48935181)
chr1 (136-258)||(38283600-38283721)
chr1 (46-120)||(47411028-47411102)
chr1 (151-200)||(25786115-25786164)
chr1 (47-120)||(26056145-26056218)
chr1 (51-119)||(3978093-3978161)
chr1 (1-57)||(22169280-22169336)
chr1 (20-76)||(45042627-45042683)
chr1 (1-76)||(38283781-38283856)
chr1 (46-120)||(16218476-16218550)
chr1 (47-120)||(49139846-49139919)
chr1 (155-200)||(52181225-52181270)
chr1 (47-119)||(9592283-9592355)
chr1 (52-108)||(14071213-14071269)
chr1 (52-120)||(14390308-14390376)
chr1 (151-195)||(25787089-25787133)
[»] chr3 (44 HSPs)
chr3 (1-244)||(48866140-48866382)
chr3 (1-108)||(35173146-35173253)
chr3 (1-120)||(23559818-23559937)
chr3 (1-98)||(43346467-43346564)
chr3 (147-258)||(12060782-12060893)
chr3 (47-200)||(51825541-51825692)
chr3 (1-108)||(12062394-12062501)
chr3 (1-100)||(23561143-23561242)
chr3 (1-120)||(43345318-43345437)
chr3 (19-117)||(21127942-21128040)
chr3 (1-76)||(1031815-1031890)
chr3 (1-108)||(12060658-12060764)
chr3 (3-81)||(48867467-48867545)
chr3 (142-244)||(49334213-49334315)
chr3 (19-108)||(35174392-35174481)
chr3 (1-74)||(39530794-39530867)
chr3 (137-258)||(23561001-23561128)
chr3 (1-76)||(7921685-7921760)
chr3 (1-76)||(50150720-50150795)
chr3 (47-120)||(54653964-54654037)
chr3 (1-76)||(2088841-2088916)
chr3 (1-76)||(33000842-33000917)
chr3 (160-238)||(39287606-39287684)
chr3 (14-76)||(39531858-39531920)
chr3 (1-75)||(45730636-45730710)
chr3 (1-74)||(32999796-32999869)
chr3 (129-238)||(47854612-47854721)
chr3 (52-120)||(7820440-7820508)
chr3 (143-238)||(48825952-48826047)
chr3 (143-238)||(52293404-52293499)
chr3 (1-76)||(53901568-53901643)
chr3 (19-76)||(4067943-4068000)
chr3 (1-74)||(46690338-46690411)
chr3 (52-108)||(36626781-36626837)
chr3 (49-200)||(47808027-47808175)
chr3 (47-120)||(8371265-8371338)
chr3 (47-120)||(11219475-11219548)
chr3 (47-108)||(11220668-11220729)
chr3 (47-120)||(32980450-32980523)
chr3 (19-76)||(38639035-38639092)
chr3 (150-195)||(42632852-42632897)
chr3 (52-120)||(25585831-25585899)
chr3 (47-119)||(41386175-41386247)
chr3 (52-120)||(53808368-53808436)
[»] chr2 (30 HSPs)
chr2 (1-258)||(14510390-14510626)
chr2 (1-119)||(14509208-14509326)
chr2 (1-83)||(25570905-25570987)
chr2 (1-105)||(7983708-7983811)
chr2 (1-91)||(15850686-15850776)
chr2 (1-76)||(7982311-7982386)
chr2 (143-238)||(33836909-33837004)
chr2 (46-238)||(2305584-2305775)
chr2 (139-243)||(42246726-42246830)
chr2 (1-100)||(3533644-3533743)
chr2 (1-76)||(15850111-15850186)
chr2 (143-238)||(41312640-41312735)
chr2 (10-76)||(20630713-20630779)
chr2 (47-120)||(12852931-12853004)
chr2 (19-114)||(3532211-3532306)
chr2 (143-238)||(3665364-3665459)
chr2 (47-118)||(7037011-7037082)
chr2 (61-120)||(40174762-40174821)
chr2 (46-120)||(21012078-21012152)
chr2 (14-99)||(32614397-32614482)
chr2 (42-91)||(35801072-35801121)
chr2 (1-76)||(25569768-25569843)
chr2 (1-76)||(33553407-33553482)
chr2 (47-108)||(6706971-6707032)
chr2 (19-108)||(7490205-7490294)
chr2 (19-120)||(8537029-8537130)
chr2 (47-120)||(15650486-15650559)
chr2 (47-108)||(29424622-29424683)
chr2 (11-76)||(30178554-30178619)
chr2 (1-57)||(8538686-8538742)
[»] chr6 (19 HSPs)
chr6 (129-244)||(16269493-16269608)
chr6 (137-258)||(14326267-14326394)
chr6 (137-258)||(14419277-14419404)
chr6 (1-119)||(14328773-14328890)
chr6 (1-119)||(14421783-14421900)
chr6 (1-100)||(14326152-14326251)
chr6 (1-100)||(14419162-14419261)
chr6 (1-83)||(13800030-13800112)
chr6 (3-65)||(16269821-16269883)
chr6 (1-76)||(1757536-1757611)
chr6 (1-58)||(5693647-5693704)
chr6 (1-76)||(27107180-27107255)
chr6 (1-76)||(27148986-27149061)
chr6 (1-73)||(1692073-1692145)
chr6 (130-202)||(16251381-16251453)
chr6 (47-119)||(33807734-33807806)
chr6 (13-75)||(27108217-27108279)
chr6 (13-75)||(27150014-27150076)
chr6 (47-120)||(31738408-31738481)
[»] chr4 (49 HSPs)
chr4 (1-108)||(17319041-17319148)
chr4 (1-120)||(44159084-44159203)
chr4 (1-105)||(50531769-50531873)
chr4 (1-108)||(34438405-34438512)
chr4 (1-120)||(34439658-34439777)
chr4 (1-120)||(38417552-38417671)
chr4 (1-120)||(38419015-38419134)
chr4 (1-96)||(43419397-43419492)
chr4 (141-244)||(40146508-40146611)
chr4 (1-76)||(43708835-43708910)
chr4 (1-83)||(41348238-41348320)
chr4 (1-120)||(6138996-6139115)
chr4 (1-76)||(11482795-11482870)
chr4 (19-108)||(50530520-50530609)
chr4 (47-200)||(5688557-5688708)
chr4 (13-83)||(41349560-41349630)
chr4 (1-75)||(43418032-43418106)
chr4 (47-200)||(1273353-1273504)
chr4 (1-73)||(26045131-26045203)
chr4 (150-238)||(29833518-29833606)
chr4 (143-238)||(30671946-30672041)
chr4 (1-76)||(47573686-47573761)
chr4 (14-76)||(47242964-47243026)
chr4 (67-120)||(6140358-6140411)
chr4 (47-119)||(5687220-5687292)
chr4 (150-238)||(29834314-29834402)
chr4 (52-120)||(35787846-35787914)
chr4 (1-76)||(43709916-43709990)
chr4 (1-76)||(47572586-47572660)
chr4 (156-238)||(526600-526682)
chr4 (67-120)||(86868-86921)
chr4 (1-74)||(5417303-5417376)
chr4 (47-120)||(11113787-11113860)
chr4 (46-99)||(26393146-26393199)
chr4 (49-243)||(48206207-48206399)
chr4 (149-228)||(4373522-4373602)
chr4 (171-239)||(23153142-23153210)
chr4 (60-120)||(38370340-38370400)
chr4 (1-53)||(44160475-44160527)
chr4 (150-233)||(47606486-47606570)
chr4 (143-238)||(936357-936452)
chr4 (60-238)||(15446548-15446728)
chr4 (1-76)||(50496994-50497069)
chr4 (1-76)||(50498014-50498089)
chr4 (149-200)||(55953772-55953823)
chr4 (47-120)||(11114978-11115051)
chr4 (14-119)||(39592288-39592393)
chr4 (47-108)||(55952870-55952931)
chr4 (20-76)||(17494145-17494201)
[»] chr5 (34 HSPs)
chr5 (1-119)||(12862917-12863035)
chr5 (1-108)||(22819559-22819666)
chr5 (46-258)||(40059187-40059400)
chr5 (1-119)||(12830937-12831055)
chr5 (11-120)||(15857616-15857725)
chr5 (1-76)||(11907203-11907278)
chr5 (1-120)||(32734132-32734249)
chr5 (1-120)||(42510113-42510232)
chr5 (1-78)||(39134666-39134743)
chr5 (16-120)||(40058032-40058136)
chr5 (1-76)||(24070404-24070479)
chr5 (1-118)||(42511666-42511783)
chr5 (1-76)||(39135690-39135765)
chr5 (19-105)||(7426658-7426744)
chr5 (14-76)||(8188242-8188304)
chr5 (129-243)||(26911284-26911398)
chr5 (157-238)||(20988844-20988925)
chr5 (46-108)||(18678020-18678082)
chr5 (52-177)||(15614902-15615026)
chr5 (1-57)||(22818159-22818215)
chr5 (19-99)||(24761740-24761820)
chr5 (1-69)||(29221189-29221256)
chr5 (14-108)||(27894033-27894127)
chr5 (52-118)||(42979498-42979564)
chr5 (12-73)||(8187176-8187236)
chr5 (19-76)||(8284286-8284343)
chr5 (173-238)||(15510145-15510210)
chr5 (71-120)||(22819515-22819564)
chr5 (1-78)||(23679146-23679223)
chr5 (1-78)||(23855589-23855666)
chr5 (47-108)||(38471334-38471395)
chr5 (56-108)||(2167524-2167576)
chr5 (1-61)||(11906354-11906414)
chr5 (1-57)||(12861548-12861604)
[»] chr7 (41 HSPs)
chr7 (129-257)||(33458435-33458563)
chr7 (1-105)||(4167450-4167554)
chr7 (13-105)||(35315235-35315327)
chr7 (1-105)||(10257401-10257503)
chr7 (150-238)||(30223858-30223946)
chr7 (1-76)||(4168891-4168966)
chr7 (52-200)||(22060513-22060659)
chr7 (1-76)||(40881090-40881165)
chr7 (1-76)||(47537082-47537157)
chr7 (1-76)||(47927378-47927453)
chr7 (1-83)||(132034-132116)
chr7 (1-91)||(35484337-35484427)
chr7 (52-238)||(43936022-43936206)
chr7 (20-108)||(10256141-10256229)
chr7 (150-238)||(30222792-30222880)
chr7 (1-76)||(35483572-35483648)
chr7 (1-76)||(13287036-13287111)
chr7 (1-76)||(29344163-29344238)
chr7 (129-200)||(35128112-35128182)
chr7 (149-238)||(41126385-41126474)
chr7 (52-120)||(7148056-7148124)
chr7 (1-76)||(37781956-37782031)
chr7 (1-76)||(47928472-47928547)
chr7 (144-238)||(36673717-36673811)
chr7 (13-74)||(33071682-33071743)
chr7 (52-120)||(14206723-14206791)
chr7 (52-120)||(14215413-14215481)
chr7 (20-76)||(29408264-29408320)
chr7 (20-76)||(29409280-29409336)
chr7 (158-238)||(41618380-41618460)
chr7 (129-200)||(22061715-22061785)
chr7 (1-108)||(27899224-27899331)
chr7 (52-200)||(43007569-43007715)
chr7 (47-108)||(19279622-19279683)
chr7 (47-108)||(38406063-38406124)
chr7 (47-120)||(43006430-43006503)
chr7 (46-119)||(46674933-46675006)
chr7 (129-238)||(47163278-47163386)
chr7 (47-119)||(22744791-22744863)
chr7 (19-83)||(27897709-27897773)
chr7 (20-76)||(29345120-29345176)
[»] chr8 (39 HSPs)
chr8 (155-258)||(8096426-8096529)
chr8 (1-108)||(8095346-8095452)
chr8 (1-108)||(20308604-20308711)
chr8 (1-108)||(21095237-21095344)
chr8 (1-83)||(22619894-22619976)
chr8 (1-83)||(22621169-22621251)
chr8 (1-105)||(41522701-41522805)
chr8 (19-120)||(13367048-13367149)
chr8 (47-244)||(36071252-36071449)
chr8 (19-83)||(34616146-34616210)
chr8 (16-120)||(39220693-39220797)
chr8 (1-76)||(9190484-9190558)
chr8 (19-108)||(2421303-2421392)
chr8 (1-82)||(34617231-34617312)
chr8 (46-119)||(36940032-36940105)
chr8 (1-117)||(8096546-8096662)
chr8 (1-76)||(4534033-4534108)
chr8 (1-76)||(9189393-9189468)
chr8 (1-76)||(12818753-12818828)
chr8 (1-76)||(12820140-12820215)
chr8 (1-76)||(16346098-16346173)
chr8 (1-76)||(41521316-41521391)
chr8 (46-108)||(24069456-24069518)
chr8 (1-74)||(22914234-22914307)
chr8 (47-200)||(31623951-31624102)
chr8 (47-120)||(36756109-36756182)
chr8 (1-57)||(2419873-2419929)
chr8 (20-76)||(35463031-35463087)
chr8 (60-120)||(39546675-39546735)
chr8 (19-74)||(22913209-22913264)
chr8 (1-76)||(23768527-23768602)
chr8 (46-120)||(7486121-7486195)
chr8 (46-120)||(41866938-41867012)
chr8 (63-120)||(117109-117166)
chr8 (151-200)||(38589967-38590016)
chr8 (15-76)||(43579693-43579754)
chr8 (1-57)||(31872865-31872921)
chr8 (20-56)||(35462685-35462721)
chr8 (1-73)||(45195849-45195920)
[»] scaffold0098 (2 HSPs)
scaffold0098 (13-108)||(42356-42451)
scaffold0098 (1-63)||(40915-40977)
[»] scaffold0178 (1 HSPs)
scaffold0178 (47-243)||(2141-2336)
[»] scaffold0122 (2 HSPs)
scaffold0122 (1-105)||(17173-17277)
scaffold0122 (1-71)||(15949-16019)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-76)||(85118-85193)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-76)||(205594-205669)
[»] scaffold0177 (1 HSPs)
scaffold0177 (150-238)||(1901-1989)
[»] scaffold0045 (1 HSPs)
scaffold0045 (15-119)||(77180-77284)
[»] scaffold0166 (1 HSPs)
scaffold0166 (19-99)||(4237-4317)
[»] scaffold1974 (1 HSPs)
scaffold1974 (14-120)||(626-732)
[»] scaffold1878 (1 HSPs)
scaffold1878 (14-120)||(542-648)
[»] scaffold0290 (1 HSPs)
scaffold0290 (14-120)||(9476-9582)
[»] scaffold0369 (1 HSPs)
scaffold0369 (47-120)||(12955-13028)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 40812718 - 40812473
Alignment:
Q  11 cccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaa 110  Q
    ||||||| ||||||||||||||||| |  |||||  ||||||||||||||||||| |||||||||||  |||||| ||||| | |||||| |||||||      
T  40812718 cccggtcccttaacttattttattttcctagtttggtcccttaactattaagtgtctcaatttggttatataactcttctgccatttactattttggtct 40812619  T
Q  111 tctccgttagnnnnnnnncaaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaat 210  Q
    | || |||||        ||||||| |||||||  || ||||| ||||| |||||| ||||||||||| | |||||||||||||||||||||||| ||||    
T  40812618 tttctgttagttttttt-caaaaaccgttaaccttttgtccacatgtcagttaaga-tggtgatcaattgttggatttagaaagcacacaaatatacaat 40812521  T
Q  211 gaacccacaacatataatcatttctattgaattttatacaaataaaaa 258  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  40812520 gaactcacaacatagaatcatttctattgaattttctacaaataaaaa 40812473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 258
Target Start/End: Original strand, 2971825 - 2971954
Alignment:
Q  129 caaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataat 228  Q
    |||||| |||||||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||  ||||||| |||||||||| ||    
T  2971825 caaaaattgttaaccccttgtccacgtgtcatttaagattggcgatcaagggctggatttagaaagcacacaaatataaaatgaactcacaacatatgat 2971924  T
Q  229 catttctattgaattttatacaaataaaaa 258  Q
     |||||||||||||||| || |||| ||||    
T  2971925 tatttctattgaattttctaaaaattaaaa 2971954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 36511448 - 36511329
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||||| ||| ||||| ||||||||||| ||||||||  |||||||||||| |||||| |||||||||| |||||| | ||||||||||||||    
T  36511448 taatacatcccccagtcccttaatttattttattttctcagtttggtcccttaactataaagtgtctcaatttggtcccataaatcttctgtcgtttact 36511349  T
Q  101 gttttggtaatctccgttag 120  Q
     ||||||| |||||||||||    
T  36511348 attttggtcatctccgttag 36511329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 36509828 - 36509929
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtt 118  Q
    ||||||||||||||||| ||||||||  |||||||||||| |||||||||||||||||||||||| | ||||| |||||||| |||||||  ||||||||    
T  36509828 cttaacttattttattttctcagtttggtcccttaactataaagtgtttcaatttggttccataaatcttctgccgtttactattttggttctctccgtt 36509927  T
Q  119 ag 120  Q
    ||    
T  36509928 ag 36509929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 51726961 - 51726857
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||  ||  |||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  51726961 taatacatcccccggtcccttaacttattttattttctcagtttggtcatttaactataaagtgtctcaatttggttccataaatcttctgtcgtttact 51726862  T
Q  101 gtttt 105  Q
     ||||    
T  51726861 atttt 51726857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 40811194 - 40811313
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||||| ||| |||||||| | |||||||| || || |||||| |    
T  40811194 taatacatccctcggtcccttaacttattctattttctcagtttgatcccttaactattaaatgtctcaatttgatcccataactcttttgccgtttatt 40811293  T
Q  101 gttttggtaatctccgttag 120  Q
     ||||||| |||||||||||    
T  40811294 attttggtcatctccgttag 40811313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8092597 - 8092704
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||| ||||||| ||||||||||||||||| |||||| |  ||||||||||||||||||| ||||||||||||||||| | |||   ||||||||    
T  8092597 taatacatctcccggtcccttaacttattttattttctcagtgtagtcccttaactattaagtgtatcaatttggttccataaatcttcctccgtttact 8092696  T
Q  101 gttttggt 108  Q
    | ||||||    
T  8092697 gatttggt 8092704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 24516333 - 24516408
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||    
T  24516333 taatacatcccccggtcccttaacttattttattttctgagtttgatcccttaactattaagtgtgtcaatttggt 24516408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26803333 - 26803251
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    |||||||| |||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||| ||||||||    
T  26803333 taatacattccccggtcccttaacttattttattttctcagtttgatctcttaactattaagtgtgtcaatttgattccataa 26803251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40110769 - 40110687
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||| || || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| ||||||    
T  40110769 taatacatccctcgatcccttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttggtcccataa 40110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 24517731 - 24517649
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||| | |||||||| |||||||||| ||||||    
T  24517731 taatacatcccacggtcccttaacttattttattttctcagtttaatcccttaatttttaagtgtgtcaatttggtcccataa 24517649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 40109360 - 40109442
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||| ||||||    
T  40109360 taatacatcccacgatcccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataa 40109442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 14764235 - 14764347
Alignment:
Q  8 tcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttgg 107  Q
    ||||| |||| |||||||||||||||||  | ||||| ||||||||| |||||||||| | ||||||||  ||||| | ||||||||||||||||||| |    
T  14764235 tcccctggtcccttaacttattttatttttttagtttgatcccttaattattaagtgtgttaatttggtctcataagtcttctgtcgtttactgttttag 14764334  T
Q  108 taatctccgttag 120  Q
    | ||||| |||||    
T  14764335 tcatctctgttag 14764347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14169618 - 14169725
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| |||| ||| ||||||||||||||||| ||||||||  ||| |||||||| || ||| |||||||||| |||||| | || |||||||||||    
T  14169618 taatacattccccagtcccttaacttattttattttctcagtttggtcctttaactataaaatgtctcaatttggtcccataaatcttttgtcgtttact 14169717  T
Q  101 gttttggt 108  Q
     |||||||    
T  14169718 attttggt 14169725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 14765211 - 14765092
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| | ||||||  |||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||| |||||| | || ||  |||||||    
T  14765211 taatacattctccggtcctttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcccataaattttttgcagtttact 14765112  T
Q  101 gttttggtaatctccgttag 120  Q
     ||| |||  ||||||||||    
T  14765111 atttcggtcctctccgttag 14765092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 19464619 - 19464718
Alignment:
Q  21 taacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||||||||||||  |||||||  |||||||| ||| ||||||||||||||||||||| || | ||||| |||||||| ||||||| |||||| ||||    
T  19464619 taacttattttattttttcagtttggtcccttaattataaagtgtttcaatttggttccacaaatcttctgccgtttactattttggtcatctccattag 19464718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 22167778 - 22167885
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||||   || |||||||||||||| || ||||||||  |||||||| ||||||||||||||||||||| |||||| | ||||| |||||| |    
T  22167778 taatacatcccctaatcccttaacttattttaatttctcagtttagtcccttaaatattaagtgtttcaatttggtcccataaatcttctgccgtttatt 22167877  T
Q  101 gttttggt 108  Q
     |||||||    
T  22167878 attttggt 22167885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 35684179 - 35684084
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| |||||||||||| ||| |||||| |||| |||||| |||| |||||| ||| |||||| | |||||||||||||||||||||||    
T  35684179 cccttgtccacatgtcatttaagattggagatcaagggctagatttaaaaagtacacaagtatacaatgagctcacaacatataatcatttctatt 35684084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 21278199 - 21278093
Alignment:
Q  138 ttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctat 237  Q
    ||||||| ||||||||||||||||||||| |||||||||| | ||| |||||||  || ||||||||| |||| ||| |||||||| | || ||||||||    
T  21278199 ttaaccctttatccacgtgtcatttaagattggtgatcaaagactgaatttagagggcgcacaaatatacaataaactcacaacatgtgattatttctat 21278100  T
Q  238 tgaattt 244  Q
    | |||||    
T  21278099 taaattt 21278093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 19466300 - 19466203
Alignment:
Q  23 acttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||||||||| ||||||||  ||| |||||||| |||||| |||||||||| |||||| | |||||||||||||| || ||||  ||||||||||    
T  19466300 acttattttattttctcagtttggtcctttaactataaagtgtctcaatttggtcccataaatcttctgtcgtttactattgtggttctctccgttag 19466203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26801942 - 26802006
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgt 65  Q
    |||||||||| ||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||    
T  26801942 taatacatcctccggtctcttagcttattttattttttcagtttgatcccttaactattaagtgt 26802006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 34531815 - 34531898
Alignment:
Q  155 tgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||||||||||| |||||||||| |||| |||||  |||| |||||||||| |||||  | |||||||||||||||||||||||    
T  34531815 tgtcatttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacatataatcatttctatt 34531898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 48973338 - 48973433
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| |||||||||||| |||||||||| |||| |||||  |||| |||||| ||| |||||  | |||||||||||||||||||||||    
T  48973338 cccttgtccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttctatt 48973433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 26054942 - 26055003
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||| ||||||| |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  26054942 tcccctaactataaagtgtttcaatttggttccataaatcttctgtcgtttactattttggt 26055003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 25889462 - 25889374
Alignment:
Q  150 ccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||| |||||||||||| |||||||||| |||| |||||  |||  |||||| ||| ||||| || |||||||||||||||||||||||    
T  25889462 ccacatgtcatttaagattggtgatcaagggctagatttgaaaaatacacaagtatacaatggactcacaacatataatcatttctatt 25889374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 21246592 - 21246521
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatt 72  Q
    ||||||||| ||||||| |||||||||||||| || ||||||||  |||||||||||||||  |||||||||    
T  21246592 taatacatctcccggtcccttaacttattttaatttctcagtttggtcccttaactattaaacgtttcaatt 21246521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43807434 - 43807509
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| ||||||  ||||||||||||| || ||||||||  ||| ||||||||||| ||||||||||||||    
T  43807434 taatacatcctccggtcctttaacttattttaatttctcagtttagtccattaactattaaatgtttcaatttggt 43807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 49141568 - 49141494
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||||||||||||||||||||| ||||| |||||| | ||||| |||||||  |||| || |||||||||||    
T  49141568 atcccttaactattaagtgtttcaaattggtcccataatttttctgccgtttaccattttagtcatctccgttag 49141494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 3979384 - 3979311
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||||||||| |||||| |||||||||| |||||| | ||||| |||||||| |||||||  ||||||||||    
T  3979384 tcccttaactataaagtgtctcaatttggtcccataattcttctgccgtttactattttggtcctctccgttag 3979311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 51725342 - 51725415
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttg 74  Q
    ||||| ||||||||||| |||||||||||||| || ||||||||  ||| |||||||| |||||| ||||||||    
T  51725342 taatatatcccccggtcccttaacttattttaatttctcagtttagtcctttaactataaagtgtctcaatttg 51725415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 47560184 - 47560256
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    |||| ||||||| ||||||||||||||| | |  ||| ||||||| |||||||||||||||| ||||||||||    
T  47560184 tcccctaactataaagtgtttcaatttgatcctttaaatattctgccgtttactgttttggtcatctccgtta 47560256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 16217490 - 16217636
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaaccccttatcc 151  Q
    ||||||| |||||| |||||||||| | |||| | || |||| |||||| ||||||| |||||||||||        ||||| |||||||| | || |||    
T  16217490 taactataaagtgtctcaatttggtcctataaatcttatgtcatttactattttggtcatctccgttag-tattttgcaaaatctgttaactcatt-tcc 16217587  T
Q  152 acgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    ||||||||||||||| ||| |||||| || | |||||| ||||||||||    
T  16217588 acgtgtcatttaagattggcgatcaacggttagatttaaaaagcacaca 16217636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30743086 - 30743161
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||| |||||||  ||||||||||||| || |||| | |  ||||||||||||||| ||||||||||||||    
T  30743086 taatacatctcccggtcctttaacttattttaatttctcaatgtggtcccttaactattaaatgtttcaatttggt 30743161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38280849 - 38280924
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| ||||||  |||| ||||||||||| ||||||||  ||| ||||||||||| ||| ||||||||||    
T  38280849 taatacatcctccggtcctttaagttattttattttctcagtttggtccattaactattaattgtgtcaatttggt 38280924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43808638 - 43808563
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||  ||||| |||||||||||||| || |||||| |  |||||||||||||||  |||||||||||||    
T  43808638 taatacatccttcggtcccttaacttattttaatttctcagtgtggtcccttaactattaaacgtttcaatttggt 43808563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 48935181 - 48934991
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccct 146  Q
    |||| ||||||| |||||| |||||||||| || ||  | ||||| ||||  || ||||||| |||||||||||        ||||||  |||||||| |    
T  48935181 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgttagtttgttttcaaaaatagttaaccc-t 48935083  T
Q  147 tatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    | ||||| | |||||||||| || ||||||| |||| |||||  |||| |||||| ||| |||||  | |||||||||||||||||| ||||    
T  48935082 tgtccacatatcatttaagattgatgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttttatt 48934991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 38283721 - 38283600
Alignment:
Q  136 tgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttct 235  Q
    ||||||||||||||| |||||||| | |||| ||||||||||  | ||||||||| | |  |||||||||   || ||| |||||||||| || ||||||    
T  38283721 tgttaaccccttatctacgtgtcactcaaga-tggtgatcaagagttggatttaggaggtgcacaaatatatgataaactcacaacatatgattatttct 38283623  T
Q  236 attgaattttatacaaataaaaa 258  Q
    |||||||||| || |||| ||||    
T  38283622 attgaattttctaaaaattaaaa 38283600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 47411028 - 47411102
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||| ||||||| |||||| ||||||||||  ||||| | || ||||||||||| ||||||| |||||||||||    
T  47411028 atcccctaactataaagtgtctcaatttggtctcataaatcttatgtcgtttactattttggtcatctccgttag 47411102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 25786115 - 25786164
Alignment:
Q  151 cacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    |||||||||||||||| |||||||||| || |||||||| ||||||||||    
T  25786115 cacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 25786164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 26056218 - 26056145
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| |||||| |||||||||| |||||| | || ||||||||||| |||||||  ||||||||||    
T  26056218 tcccctaactataaagtgtctcaatttggtcccataaatcttttgtcgtttactattttggtcctctccgttag 26056145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 3978093 - 3978161
Alignment:
Q  51 ttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    |||||||| |||||| |||||||| | |||||| | |||||||||||||| |||||||  |||||||||    
T  3978093 ttaactataaagtgtctcaatttgatcccataattcttctgtcgtttactattttggtcctctccgtta 3978161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22169336 - 22169280
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaacta 57  Q
    ||||||||| ||| ||| |||||||||||||| || |||||||| ||||||||||||    
T  22169336 taatacatctcccagtcccttaacttattttaatttctcagtttgatcccttaacta 22169280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 45042627 - 45042683
Alignment:
Q  20 ttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||| ||||||||||| |||||||| ||||||||||| |||| |||||||| |||||    
T  45042627 ttaatttattttattttctcagtttgatcccttaactgttaaatgtttcaaattggt 45042683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38283856 - 38283781
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||  |||||||| |||||||||||||||||  |||||||  |||  || ||||||||||| ||||||||||    
T  38283856 taatacactccccggtcccttaacttattttattttttcagtttagtcctctatctattaagtgtgtcaatttggt 38283781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 16218550 - 16218476
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||| ||||||| |||| | |||||||||| |||||| | || ||||||||| | ||||||| |||||||||||    
T  16218550 atcccctaactataaagtatctcaatttggtcccataaatcttatgtcgtttaatattttggtcatctccgttag 16218476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 49139846 - 49139919
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| |||||| ||||||||||  ||||| | ||| |  ||||||| |||||||||||||||||||    
T  49139846 tcccataactataaagtgtctcaatttggtctcataaatcttccgcagtttactattttggtaatctccgttag 49139919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 52181270 - 52181225
Alignment:
Q  155 tgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    |||||||||||| |||||||||| || |||||||| ||||||||||    
T  52181270 tgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 52181225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 9592283 - 9592355
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    |||| ||||||| ||||||||||||||| | |||||| | || ||||||||||| ||||| | || |||||||    
T  9592283 tcccctaactataaagtgtttcaatttgatcccataaatcttttgtcgtttactattttgatcatttccgtta 9592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 14071269 - 14071213
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    ||||||| |||||| |||||||||| |||||| | |||||||||||||  |||||||    
T  14071269 taactataaagtgtctcaatttggtcccataagtcttctgtcgtttaccattttggt 14071213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 14390308 - 14390376
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||| || ||| ||||||||||||||||| | |||| ||||||||  |||||||  ||||||||||    
T  14390308 taactataaaatgtctcaatttggttccataaatcttctttcgtttaccattttggtcctctccgttag 14390376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 25787133 - 25787089
Alignment:
Q  151 cacgtgtcatttaagagtggtgatcaatggctggatttagaaagc 195  Q
    |||||||||||||||| |||||||||| || |||||||| |||||    
T  25787133 cacgtgtcatttaagattggtgatcaacggttggatttaaaaagc 25787089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 48866140 - 48866382
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| ||||  |||||||||||||||||||| ||||||||  ||||| ||||||||||||| |||||||||| | |||| | ||||  ||||||||    
T  48866140 taatacataccccaatctcttaacttattttattttctcagtttagtccctgaactattaagtgtgtcaatttggtcctataagtcttcttccgtttact 48866239  T
Q  101 gttttggtaatctccgttagnnnnnnnncaaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
      | ||||  ||||||||||        |||||| |||||||||||| | |||||||||||| ||| || ||||||| | ||||||||||||||| ||||    
T  48866240 aatatggtcctctccgttagttttttt-caaaaattgttaaccccttgttcacgtgtcattttagattgatgatcaaggactggatttagaaagcgcaca 48866338  T
Q  201 aatattcaatgaacccacaacatataatcatttctattgaattt 244  Q
    ||||| ||||| || ||||||||||||| |||||||||||||||    
T  48866339 aatatacaatggactcacaacatataattatttctattgaattt 48866382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 35173146 - 35173253
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||  ||||||| || |||||||||||    
T  35173146 taatacatcccccagtcccttaacttattttattttctcaatttcatcccttaactattaagtatttcaatttggtctcataactcttttgtcgtttact 35173245  T
Q  101 gttttggt 108  Q
     |||||||    
T  35173246 attttggt 35173253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 23559818 - 23559937
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||  |||||||| |||||||||| |||||||| | |||||| | ||||||||||||||    
T  23559818 taatacattccccggtcccttaacttattttattttctcagtttggtcccttaattattaagtgtctcaatttgatcccataattcttctgtcgtttact 23559917  T
Q  101 gttttggtaatctccgttag 120  Q
     |||||||  ||||||||||    
T  23559918 attttggtcctctccgttag 23559937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 43346564 - 43346467
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgttta 98  Q
    |||||||||||||| |  ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||  ||||||| ||||||||||||    
T  43346564 taatacatcccccgataccttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttggtctcataactcttctgtcgttta 43346467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 12060782 - 12060893
Alignment:
Q  147 tatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattgaatttta 246  Q
    ||||||| ||||| |||||| |||||||||||||||| ||||||||||||| ||||||| |||| ||| | ||||| || ||||||||||||||||||      
T  12060782 tatccacatgtcacttaagattggtgatcaatggctgaatttagaaagcacgcaaatatacaataaactcgcaacagatgatcatttctattgaatttcc 12060881  T
Q  247 tacaaataaaaa 258  Q
    ||||||||||||    
T  12060882 tacaaataaaaa 12060893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 51825692 - 51825541
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccct 146  Q
    |||||||||||| ||||||||||||||||| |||||| | |||||||||||||| ||||||| || ||||||||        ||||| ||||||| | ||    
T  51825692 tcccttaactataaagtgtttcaatttggtcccataaatcttctgtcgtttactattttggtcatatccgttag-tattttgcaaaatctgttaa-ctct 51825595  T
Q  147 tatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    | ||||||||||| |||||| ||||||||||||| || ||||| ||||||||||    
T  51825594 tttccacgtgtcagttaagattggtgatcaatggttgaatttaaaaagcacaca 51825541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12062501 - 12062394
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||| |||||| |||||||||||||||||  |||||||  ||||||||||||||||||| |||||||||| |||| ||| || ||  |||||||    
T  12062501 taatacatcctccggtcccttaacttattttattttttcagtttggtcccttaactattaagtgtctcaatttggtcccattactcttttgctgtttact 12062402  T
Q  101 gttttggt 108  Q
     |||||||    
T  12062401 attttggt 12062394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 23561242 - 23561143
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||||| || ||||||||||||||||| |||||||| ||||||||| |||||||||| | |||||||| | |||| | ||||| ||||||||    
T  23561242 taatacatcccccgatcccttaacttattttattttctcagtttgatcccttaattattaagtgtcttaatttggtcctataattcttctgacgtttact 23561143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 43345318 - 43345437
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||| | || ||||||||||||||||| |||||||   |||||||||||| || |||||||||||||| |||||| | |||| ||||||||     
T  43345318 taatacatccccagatcccttaacttattttattttctcagttaggtcccttaactataaaatgtttcaatttggtcccataaatcttctctcgtttacc 43345417  T
Q  101 gttttggtaatctccgttag 120  Q
     |||||||  ||||||||||    
T  43345418 attttggttttctccgttag 43345437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 21127942 - 21128040
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgt 117  Q
    |||||||||||||||||  ||||||| ||| |||||||||||||||| |||||||||| |||||||| ||||| |||||||  ||||||| || |||||    
T  21127942 cttaacttattttattttttcagtttgatctcttaactattaagtgtgtcaatttggtcccataactcttctgccgtttaccattttggtcatttccgt 21128040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1031815 - 1031890
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| |||||||||||||| || |||||| |  ||||||||||||||| ||||||||||||||    
T  1031815 taatacatcccccggtcccttaacttattttaatttctcagtgtggtcccttaactattaaatgtttcaatttggt 1031890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 12060658 - 12060764
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||| | || ||||||||||||||||| ||||||||  || |||||||||||||||| |||||||||   |||||||||| || ||||||||    
T  12060658 taatacatccccag-tcccttaacttattttattttctcagtttagtctcttaactattaagtgtctcaatttggcctcataactattttgccgtttact 12060756  T
Q  101 gttttggt 108  Q
     |||||||    
T  12060757 attttggt 12060764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 48867545 - 48867467
Alignment:
Q  3 atacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccat 81  Q
    |||||||| |||||| ||||||||||||||||| |||| |||  ||||||||||||||||||| |||||||||| ||||    
T  48867545 atacatcctccggtcccttaacttattttattttctcaatttggtcccttaactattaagtgtgtcaatttggtcccat 48867467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 49334315 - 49334213
Alignment:
Q  142 ccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattgaa 241  Q
    |||||| ||||| | |||||||| | |||||||  |||||||||||| || ||| ||||||||| |||||||| |||||||||| || ||||||||||||    
T  49334315 ccccttgtccacatttcatttaatattggtgattgatggctggatttggacagcgcacaaatatacaatgaactcacaacatatgattatttctattgaa 49334216  T
Q  242 ttt 244  Q
    |||    
T  49334215 ttt 49334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 35174481 - 35174392
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||||||||||||||||  ||| |||  ||||||||||||||||||||||||  |||| |||||||| |||| ||||||||| |||||||    
T  35174481 cttaacttattttattttttcattttggtcccttaactattaagtgtttcaaaatggtcccataactcttctatcgtttactattttggt 35174392  T

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Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39530794 - 39530867
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttg 74  Q
    ||||||||||||||||| |||||||||||||| || |||||| | ||||||||||||||||  |||||||||||    
T  39530794 taatacatcccccggtcccttaacttattttaatttctcagtgtgatcccttaactattaaacgtttcaatttg 39530867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 23561128 - 23561001
Alignment:
Q  137 gttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacat------ataatca 230  Q
    ||||||||||| ||||| |||||||||||| |||||||||||| ||| |||||||||||| ||| ||||  |||||||  |||||||      ||| |||    
T  23561128 gttaaccccttgtccacatgtcatttaagattggtgatcaatgactgaatttagaaagcatacagatatataatgaacttacaacataggatcatattca 23561029  T
Q  231 tttctattgaattttatacaaataaaaa 258  Q
    ||||||||||||||  ||| ||||||||    
T  23561028 tttctattgaatttcttactaataaaaa 23561001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7921760 - 7921685
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| |||||| ||||||||||||| ||| |||||||| ||| |||||||||||||||| |||| |||||    
T  7921760 taatacatcctccggtcccttaacttattttgttttctcagtttgatcacttaactattaagtgtctcaaattggt 7921685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50150720 - 50150795
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||| |||| |||||||||||||| || ||||||||  || |||||||||||| ||||||||||||||    
T  50150720 taatacatccccgggtcccttaacttattttaatttctcagtttggtcacttaactattaaatgtttcaatttggt 50150795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 54654037 - 54653964
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||||||||| |||||| |||||||||| |||||| | |||||||||||||| |||||||  ||||||||||    
T  54654037 tcccttaactataaagtgtctcaatttggtcccataattcttctgtcgtttactattttggtcctctccgttag 54653964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2088841 - 2088916
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| ||||| |||||||| || |||||||   |||||||| |||||| ||||||||||||||    
T  2088841 taatacatcccccggtcccttaatttattttaatttctcagttaggtcccttaattattaaatgtttcaatttggt 2088916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33000917 - 33000842
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||  ||||||| | |||||||||||| || |||||||| ||||||||||||||||  |||||||||||||    
T  33000917 taatacatttcccggtcccctaacttattttaatttctcagtttgatcccttaactattaaacgtttcaatttggt 33000842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 39287606 - 39287684
Alignment:
Q  160 tttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||||| |||||||||| |||| |||||  |||| |||||||||| |||||  | |||||||||||||||||||||||    
T  39287606 tttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacatataatcatttctatt 39287684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 39531920 - 39531858
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||| |||||||||||||| || |||||||| ||||||||||||| || ||||||||||||||    
T  39531920 ggtcccttaacttattttaatttctcagtttaatcccttaactatgaaatgtttcaatttggt 39531858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 45730636 - 45730710
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttgg 75  Q
    ||||||||| || |||| |||||||||||||| || ||||||||  |||||||||||||||  ||||||||||||    
T  45730636 taatacatctcctggtcccttaacttattttaatttctcagtttggtcccttaactattaaacgtttcaatttgg 45730710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32999796 - 32999869
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttg 74  Q
    ||||||||||||||  | |||||||||||||| || ||||||||  ||||||||||||||| ||||| ||||||    
T  32999796 taatacatcccccgaccccttaacttattttaatttctcagtttggtcccttaactattaaatgttttaatttg 32999869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 47854612 - 47854721
Alignment:
Q  129 caaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataat 228  Q
    ||||||||||||| ||||| ||||| |||||||||||| | |||||||| |  | |||||  |||| || ||| ||| ||||| || |||||||||| ||    
T  47854612 caaaaactgttaaacccttgtccacatgtcatttaagatttgtgatcaaggattagatttgaaaagtacgcaagtatacaatggactcacaacatatgat 47854711  T
Q  229 catttctatt 238  Q
    ||||||||||    
T  47854712 catttctatt 47854721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 7820440 - 7820508
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||| ||||||||||||||||  |||||| | || |||||||||||||||||||  ||||||||||    
T  7820440 taactataaagtgtttcaatttggacccataaattttatgtcgtttactgttttggtcctctccgttag 7820508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 48825952 - 48826047
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| |||||||||||| |||||||||| || | | |||  |||| |||||| ||| |||||  | |||||||||||||||||||||||    
T  48825952 cccttgtccacatgtcatttaagattggtgatcaagggttaggtttgaaaagtacacaagtatacaatgggctcacaacatataatcatttctatt 48826047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 52293499 - 52293404
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| |||||||||||| |||||||||| ||||  ||||  |||| |||||| ||| ||||   | |||||||||||||||||||||||    
T  52293499 cccttgtccacatgtcatttaagattggtgatcaagggctatatttgaaaagtacacaagtatacaataggctcacaacatataatcatttctatt 52293404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 53901568 - 53901643
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||| ||||| || ||||| |||||||| || ||||||||  ||||||||||||||| ||||| ||||||||    
T  53901568 taatacataccccgatcccttaatttattttaatttctcagtttagtcccttaactattaaatgttttaatttggt 53901643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 4067943 - 4068000
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||||| ||  ||||||| |||||||||||||||| ||||| ||||||||    
T  4067943 cttaacttattttaatttatcagtttaatcccttaactattaaatgttttaatttggt 4068000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 46690411 - 46690338
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttg 74  Q
    |||||||||| |||||| |||||||||||||| || | ||| || ||||||||||||||||  |||| ||||||    
T  46690411 taatacatcctccggtcccttaacttattttaatttcccagcttaatcccttaactattaaacgttttaatttg 46690338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 36626781 - 36626837
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    ||||||| ||||||||||||||||| || ||| | || |||||||||||||||||||    
T  36626781 taactatgaagtgtttcaatttggtcccttaaatcttatgtcgtttactgttttggt 36626837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 47808175 - 47808027
Alignment:
Q  49 ccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccctta 148  Q
    |||||||||| |||||| ||||||||||  ||||| | ||||||||||| || |||||||  |||||||||           ||||||||||| | |||     
T  47808175 ccttaactataaagtgtctcaatttggtctcataaatcttctgtcgtttgctattttggtcctctccgttaatatattgc--aaaactgttaa-ctcttt 47808079  T
Q  149 tccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    ||||||||||| ||||||  ||||||||| || |||||||| ||||||||||    
T  47808078 tccacgtgtcagttaagatcggtgatcaacggttggatttaaaaagcacaca 47808027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 8371265 - 8371338
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| || ||| ||||||||||||||||| | |||||  ||||||| |||||||  ||||||||||    
T  8371265 tcccctaactataaaatgtctcaatttggttccataaatcttctgcagtttactattttggtcctctccgttag 8371338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 11219475 - 11219548
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| |||||| ||||||||||  ||| | | ||||| |||||||| ||||||| |||||||||||    
T  11219475 tcccctaactataaagtgtctcaatttggtctcatgagtcttctgccgtttactattttggtcatctccgttag 11219548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 11220729 - 11220668
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||| ||||||| |||||| |||||||||| | |||| | |||||||||||||| |||||||    
T  11220729 tcccctaactataaagtgtctcaatttggtcctataaatcttctgtcgtttactattttggt 11220668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 32980523 - 32980450
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||  |||||| |||||||||| | |||| | ||||| |||||||| ||||||| |||||||||||    
T  32980523 tcccctaactacaaagtgtctcaatttggtcctataaatcttctgccgtttactattttggtcatctccgttag 32980450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 38639035 - 38639092
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||||| ||  |||||||  |||||||||||| ||||||||| |||||||    
T  38639035 cttaacttattttagtttttcagtttggtcccttaactataaagtgtttcgatttggt 38639092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 42632852 - 42632897
Alignment:
Q  150 ccacgtgtcatttaagagtggtgatcaatggctggatttagaaagc 195  Q
    ||||||||||||||||| |||||||||| || |||||||| |||||    
T  42632852 ccacgtgtcatttaagattggtgatcaacggttggatttaaaaagc 42632897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 25585899 - 25585831
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||||||  || ||||||||||  ||||| | |||||||||||||| |||| || |||||||||||    
T  25585899 taactattaaacgtctcaatttggtctcataaatcttctgtcgtttactattttagtcatctccgttag 25585831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 41386175 - 41386247
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    |||| ||||||| |||||| ||||||||||||||||| | ||  | |||||||| |||||||  |||||||||    
T  41386175 tcccctaactataaagtgtctcaatttggttccataaatcttacgacgtttactattttggtcctctccgtta 41386247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 53808368 - 53808436
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||| |||||| ||||| |||| |||||| | || ||||||||||| ||||||| |||||| ||||    
T  53808368 taactataaagtgtctcaatctggtcccataaatcttatgtcgtttactattttggtcatctccattag 53808436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 14510626 - 14510390
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| ||||||||  |||||||||||||||| || |||||  ||||||||||||||||||| |||||||||| | |||||| ||||| ||||||||    
T  14510626 taatacataccccggtcctttaacttattttattttcttagtttagtcccttaactattaagtgtctcaatttggtcctataactcttctgccgtttact 14510527  T
Q  101 gttttggtaatctccgttagnnnnnnnncaaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
     |||| || |||| ||||                     |||||| | || | ||||||||||||| || ||||||||| ||||||||||||||||||||    
T  14510526 attttagtcatcttcgtt---------------------aaccccctgtctatgtgtcatttaagattgatgatcaatgactggatttagaaagcacaca 14510448  T
Q  201 aatattcaatgaacccacaacatataatcatttctattgaattttatacaaataaaaa 258  Q
    ||||| ||||| || |||||||||| ||||||||||||||||||  ||||||||||||    
T  14510447 aatatacaatgcactcacaacatatgatcatttctattgaatttcctacaaataaaaa 14510390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 14509208 - 14509326
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||| ||| || ||||||||||||||||| |||| |||  |||||||||||| |||||||| |||| ||| |||||| | ||||||||||||||    
T  14509208 taatacatcctccgatcccttaacttattttattttctcactttggtcccttaactataaagtgttttaattcggtcccataaatcttctgtcgtttact 14509307  T
Q  101 gttttggtaatctccgtta 119  Q
     |||||||  |||||||||    
T  14509308 attttggtcctctccgtta 14509326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25570987 - 25570905
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||  ||||| ||||||||||||||||| |||||| |  |||||||||||||||||||||||||||| ||||||||    
T  25570987 taatacatccttcggtcccttaacttattttattttctcagtgtagtcccttaactattaagtgtttcaatttgattccataa 25570905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 7983811 - 7983708
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||| | || ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||| | |||| | ||||  ||||||||    
T  7983811 taatacatcccc-gatcccttaacttattttattttctcagtttaattccttaactattaagtgtgtcaatttggtcctataagtcttctaccgtttact 7983713  T
Q  101 gtttt 105  Q
    |||||    
T  7983712 gtttt 7983708  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 15850776 - 15850686
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctg 91  Q
    ||||||||||||||||| ||||||||||||||||| || |||||  ||| |||||||| || ||||||||||||||  ||||||| |||||    
T  15850776 taatacatcccccggtcccttaacttattttattttcttagtttgctcctttaactataaaatgtttcaatttggtctcataactcttctg 15850686  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7982311 - 7982386
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||| |||| ||  |||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||    
T  7982311 taatacatctcccgatcctttaacttattttattttctcagtttgatcccttaactataaagtgtgtcaatttggt 7982386  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 33836909 - 33837004
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| |||||||||||| |||||||||| |||| |||||  |||| |||||| ||| |||||  | |||||||||||||||||||||||    
T  33836909 cccttgtccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttctatt 33837004  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 2305584 - 2305775
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccc 145  Q
    ||||| ||||||| |||||| |||||||||| || ||  | ||||| ||||  || |||||||  ||||||||||        ||||||  ||||||||     
T  2305584 atcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgttagtttgttttcaaaaatagttaaccc- 2305682  T
Q  146 ttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    || ||||| |||||||||||| ||| |||||| |||| |||||  |||| |||||| ||| |||||  | |||||||||||||||||||||||    
T  2305683 ttgtccacatgtcatttaagattggagatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttctatt 2305775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 42246726 - 42246830
Alignment:
Q  139 taaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||||| |||||||||| ||| ||||||  | ||||||| || |||||||||||||| |||| |||| ||| |||| |||||||||| || |||||||||    
T  42246726 taacccattatccacgtatcacttaagatggatgatcaagggttggatttagaaagcgcacatatatacaacgaactcacaacatatgattatttctatt 42246825  T
Q  239 gaatt 243  Q
     ||||    
T  42246826 aaatt 42246830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 3533743 - 3533644
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| | ||||||  ||||||||||||||||  | |||||  ||||||||||||||||||| ||||||||||  ||||| | || |||||||||||    
T  3533743 taatacattctccggtcctttaacttattttatttttttagtttggtcccttaactattaagtgtgtcaatttggtctcataaatcttttgtcgtttact 3533644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 15850111 - 15850186
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||| |||||||||||| |||||||||||||||||  |||||||  || ||||||||| |||||| ||||||||||    
T  15850111 taatgcatcccccggtcccttaacttattttattttttcagtttggtctcttaactataaagtgtctcaatttggt 15850186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 41312640 - 41312735
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| |||||||||||| |||||||||| || | |||||  |||| |||||  ||| ||||| || |||||||||||||||||||||||    
T  41312640 cccttgtccacatgtcatttaagattggtgatcaagggttagatttgaaaagtacacaggtatacaatggactcacaacatataatcatttctatt 41312735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 20630779 - 20630713
Alignment:
Q  10 ccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||| || ||||||||||| || |||||||| ||||||||||||||||  |||||||||||||    
T  20630779 ccccggtccctaaacttattttaatttctcagtttaatcccttaactattaaacgtttcaatttggt 20630713  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 12852931 - 12853004
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| |||||| |||||||||| |||||| | |||| ||||||||| ||||||| |||||||||||    
T  12852931 tcccctaactataaagtgtctcaatttggtcccataaatcttctatcgtttactattttggtcatctccgttag 12853004  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 3532211 - 3532306
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctc 114  Q
    ||||| |||||||||||  ||||||| ||||||||| |||||||||| ||||||||||  ||||| | || |||| |||||| |||| || |||||    
T  3532211 cttaatttattttattttttcagtttgatcccttaattattaagtgtgtcaatttggtcacataagtcttttgtcatttactattttagtcatctc 3532306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 3665364 - 3665459
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| |||||||||||| |||||||||| | || |||||  |||| |||||| ||| ||||   | |||||||||||||||||||||||    
T  3665364 cccttgtccacatgtcatttaagattggtgatcaaggactagatttgaaaagtacacaagtatacaataggctcacaacatataatcatttctatt 3665459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 7037011 - 7037082
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtt 118  Q
    |||||||||||| ||||||||||||||||| |||||| | ||||| |||||||  ||||||| || ||||||    
T  7037011 tcccttaactataaagtgtttcaatttggtcccataagtcttctgccgtttaccattttggtcatttccgtt 7037082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 40174821 - 40174762
Alignment:
Q  61 agtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||||||||||||| |||||| | |||||| ||||||| ||||||| |||||||||||    
T  40174821 agtgtttcaatttggtcccataaatcttctgttgtttactattttggtcatctccgttag 40174762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 21012152 - 21012078
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||| ||||||| ||||||||||||||||| ||  || | ||| |||||||||| ||||||| |||||||||||    
T  21012152 atcccctaactataaagtgtttcaatttggtccctcaaatcttccgtcgtttactattttggtcatctccgttag 21012078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 32614397 - 32614482
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttac 99  Q
    |||| |||| ||||||||||||  ||| |||  |||| ||||||| | |||||||||||| ||||||||||| || ||||||||||    
T  32614397 ggtcccttagcttattttattttttcattttggtcccctaactatcacgtgtttcaatttagttccataactcttatgtcgtttac 32614482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 35801121 - 35801072
Alignment:
Q  42 tttcatcccttaactattaagtgtttcaatttggttccataactattctg 91  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| |||||    
T  35801121 tttcatcccttaactataaagtgtttcaatttggtcccctaactcttctg 35801072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25569768 - 25569843
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||| ||||  ||||||||||||||||  | |||||  ||||||||||||||  ||| ||||||||||    
T  25569768 taatacatccccaggtcctttaacttattttatttttttagtttggtcccttaactattacttgtgtcaatttggt 25569843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33553482 - 33553407
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| ||| || |||||||||||||| ||  |||||||  || ||||||||||||  |||||||||||||    
T  33553482 taatacatcctccgatcccttaacttattttaatttttcagtttggtctcttaactattaaacgtttcaatttggt 33553407  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 6706971 - 6707032
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||| ||||||| |||||| ||||||||||||||||| | ||||  |||||||| |||||||    
T  6706971 tcccctaactataaagtgtctcaatttggttccataaatcttcttccgtttactattttggt 6707032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 7490294 - 7490205
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    ||||||||||||||||| ||||||||  ||| |||| ||| || ||| |||||||||| |||||| | || | | ||||||| |||||||    
T  7490294 cttaacttattttattttctcagtttggtcctttaattataaaatgtctcaatttggtcccataaatcttttattgtttactattttggt 7490205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 8537029 - 8537130
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtt 118  Q
    ||||||||||||||||| || ||||| || | |||||||  || ||| |||| ||||| || ||  ||||||||||||  || ||||||| |||||||||    
T  8537029 cttaacttattttattttcttagtttgattctttaactaaaaaatgtctcaaattggtcccttatgtattctgtcgttatctattttggtcatctccgtt 8537128  T
Q  119 ag 120  Q
    ||    
T  8537129 ag 8537130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 15650486 - 15650559
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| |||||| ||||||||||  | ||| | || ||||||||||| ||||||| |||||||||||    
T  15650486 tcccctaactataaagtgtctcaatttggtatcttaaatcttatgtcgtttactattttggtcatctccgttag 15650559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 29424683 - 29424622
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||| ||||||| ||||||||||||||||| || | | ||||||| |||||| |||||||||    
T  29424683 tcccctaactataaagtgtttcaatttggtcccttgaatattctgccgtttattgttttggt 29424622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 30178554 - 30178619
Alignment:
Q  11 cccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||| |||||||||||||| || ||||| ||  |||||||||||| || ||||||| ||||||    
T  30178554 cccggtcccttaacttattttaatttctcagattggtcccttaactatcaaatgtttcagtttggt 30178619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8538742 - 8538686
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaacta 57  Q
    |||||||||  |||||| ||||||||||||||||| ||||||||  || ||||||||    
T  8538742 taatacatcaaccggtcccttaacttattttattttctcagtttggtctcttaacta 8538686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 16269608 - 16269493
Alignment:
Q  129 caaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataat 228  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||| |||||| || |||||||| |||||||||| ||    
T  16269608 caaaaattgttaaccccttatccacgtgtaatttaagattggtgatcaagggttggatttagaaagcgcacaaacatacaatgaacgcacaacatatgat 16269509  T
Q  229 catttctattgaattt 244  Q
     |||||||||||||||    
T  16269508 tatttctattgaattt 16269493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 14326267 - 14326394
Alignment:
Q  137 gttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacat------ataatca 230  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||      ||| |||    
T  14326267 gttaacctcttatccacttgtcatttaagattggtgatcaatggctgaatttagaaagcgcacaaatatacaatgaactcacaacataggatcatattca 14326366  T
Q  231 tttctattgaattttatacaaataaaaa 258  Q
    ||||||||||||||  ||| ||||||||    
T  14326367 tttctattgaatttcttactaataaaaa 14326394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 14419277 - 14419404
Alignment:
Q  137 gttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacat------ataatca 230  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||      ||| |||    
T  14419277 gttaacctcttatccacttgtcatttaagattggtgatcaatggctgaatttagaaagcgcacaaatatacaatgaactcacaacataggatcatattca 14419376  T
Q  231 tttctattgaattttatacaaataaaaa 258  Q
    ||||||||||||||  ||| ||||||||    
T  14419377 tttctattgaatttcttactaataaaaa 14419404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 14328890 - 14328773
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||| | || ||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||  ||||| | || |||||||||||    
T  14328890 taatacatccccag-tcccttaacttattttattttctcagtttgatcccttaactattaagtgtcttaatttggtctcataattcttttgtcgtttact 14328792  T
Q  101 gttttggtaatctccgtta 119  Q
     |||||||  |||||||||    
T  14328791 attttggtcctctccgtta 14328773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 14421900 - 14421783
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||| | || ||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||  ||||| | || |||||||||||    
T  14421900 taatacatccccag-tcccttaacttattttattttctcagtttgatcccttaactattaagtgtcttaatttggtctcataattcttttgtcgtttact 14421802  T
Q  101 gttttggtaatctccgtta 119  Q
     |||||||  |||||||||    
T  14421801 attttggtcctctccgtta 14421783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14326152 - 14326251
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||||| || ||||||||||||||||| |||||||| ||||||||| |||| || || |||||||||| |||||| | |||| |||||||||    
T  14326152 taatacatcccccgatcccttaacttattttattttctcagtttgatcccttaattattgagcgtctcaatttggtcccataattcttctatcgtttact 14326251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14419162 - 14419261
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||||| || ||||||||||||||||| |||||||| ||||||||| |||| || || |||||||||| |||||| | |||| |||||||||    
T  14419162 taatacatcccccgatcccttaacttattttattttctcagtttgatcccttaattattgagcgtctcaatttggtcccataattcttctatcgtttact 14419261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 13800030 - 13800112
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    |||||||||||  |||| ||||||||||||||||| ||||||||  ||||||||||||||| ||| |||||||||| ||||||    
T  13800030 taatacatccctaggtcccttaacttattttattttctcagtttggtcccttaactattaattgtgtcaatttggtcccataa 13800112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 16269883 - 16269821
Alignment:
Q  3 atacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgt 65  Q
    |||||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  16269883 atacatcctccggtctcttaacttattttattttctcagtttgatctcttaactattaagtgt 16269821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1757611 - 1757536
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| |||||| |||||||||||||| || ||||||||  |||||||||||||||  |||||||||||||    
T  1757611 taatacatcctccggtcccttaacttattttaatttctcagtttggtcccttaactattaaacgtttcaatttggt 1757536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5693704 - 5693647
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactat 58  Q
    |||||||||||||| || ||||||||||||||||| |||| ||| |||||||||||||    
T  5693704 taatacatcccccgatcccttaacttattttattttctcaatttgatcccttaactat 5693647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27107180 - 27107255
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||| ||||| || |||||||||||||| || |||||||| |||  ||||||||||| | ||||||||||||    
T  27107180 taatacattccccgatcccttaacttattttaatttctcagtttgatcaattaactattaaatatttcaatttggt 27107255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27148986 - 27149061
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||| ||||| || |||||||||||||| || |||||||| |||  ||||||||||| | ||||||||||||    
T  27148986 taatacattccccgatcccttaacttattttaatttctcagtttgatcaattaactattaaatatttcaatttggt 27149061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1692073 - 1692145
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaattt 73  Q
    ||||||||||||| ||| ||||| |||||||| ||  |||||||  || |||||||||||| |||||||||||    
T  1692073 taatacatcccccagtcccttaatttattttaatttttcagtttggtctcttaactattaaatgtttcaattt 1692145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 16251453 - 16251381
Alignment:
Q  130 aaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaa 202  Q
    |||||||||||| | | ||||||||||| |||||||| |||||||||| |||| ||||||  |||| ||||||    
T  16251453 aaaaactgttaatctcatatccacgtgtaatttaagattggtgatcaagggcttgatttatgaagcgcacaaa 16251381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 33807734 - 33807806
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    |||||||||||| |||||| |||||||| | |||||| | ||||| ||||||| ||||||||  |||||||||    
T  33807734 tcccttaactataaagtgtctcaatttgatgccataaattttctgccgtttaccgttttggtcctctccgtta 33807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 27108279 - 27108217
Alignment:
Q  13 cggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttgg 75  Q
    ||||| |||||||||||||| || ||||||||  |||||||||||||||  |||| |||||||    
T  27108279 cggtcccttaacttattttaatttctcagtttggtcccttaactattaaacgttttaatttgg 27108217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 27150076 - 27150014
Alignment:
Q  13 cggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttgg 75  Q
    ||||| |||||||||||||| || ||||||||  |||||||||||||||  |||| |||||||    
T  27150076 cggtcccttaacttattttaatttctcagtttggtcccttaactattaaacgttttaatttgg 27150014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 31738408 - 31738481
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| ||||||||||||||||| |||||| | |||||  ||||||  |||||||  ||||||||||    
T  31738408 tcccctaactataaagtgtttcaatttggtcccataagtcttctgcggtttaccattttggtcctctccgttag 31738481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17319041 - 17319148
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||| |||||||||||||||||||||| || |||||||| ||| ||||||||| |||||||||||||||||||||||| | ||||| ||||||||    
T  17319041 taatacatcacccggtctcttaacttattttaatttctcagtttgatctcttaactataaagtgtttcaatttggttccataaatcttctggcgtttact 17319140  T
Q  101 gttttggt 108  Q
     |||||||    
T  17319141 attttggt 17319148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 44159084 - 44159203
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||| ||| |||||||  ||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||||||||| |||| ||||| |||||| |    
T  44159084 taatatatctcccggtcctttaacttattttattttttcagtttgatctcttaactattaagtgtttcaatttggttccacaactcttctgccgtttatt 44159183  T
Q  101 gttttggtaatctccgttag 120  Q
     ||||||| |||||||||||    
T  44159184 attttggtcatctccgttag 44159203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 50531873 - 50531769
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||| | ||| ||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||| |||||||| || |||||||||||    
T  50531873 taatacatcccactgtcccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataactcttttgtcgtttact 50531774  T
Q  101 gtttt 105  Q
     ||||    
T  50531773 atttt 50531769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34438405 - 34438512
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||  |||||||||||| |||||| |||||||||| |||||| | ||||| ||||||||    
T  34438405 taatacatctcccgatctcttaacttattttattttctcagtttagtcccttaactataaagtgtctcaatttggtcccataaatcttctgccgtttact 34438504  T
Q  101 gttttggt 108  Q
     |||||||    
T  34438505 attttggt 34438512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 34439777 - 34439658
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||| | ||| ||||||||||||||||| |||||| |  |||||||||||| || |||||||||||||| |||||| | ||||| ||||||||    
T  34439777 taatacatccctcagtcccttaacttattttattttctcagtgtggtcccttaactataaaatgtttcaatttggtcccataaatcttctgccgtttact 34439678  T
Q  101 gttttggtaatctccgttag 120  Q
     ||||||| |||||||||||    
T  34439677 attttggtcatctccgttag 34439658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 38417552 - 38417671
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||| || |||  |||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||| |||||| | || |||||||||||    
T  38417552 taatacatcctcctgtcctttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcccataaatcttatgtcgtttact 38417651  T
Q  101 gttttggtaatctccgttag 120  Q
     ||| |||  ||||||||||    
T  38417652 atttcggtcctctccgttag 38417671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 38419134 - 38419015
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||| ||||| ||||  ||||||||||||||||| |||||||| || |||||| |||||||||| ||||||||||  ||||| | ||||| ||||||||    
T  38419134 taatatatcccacggttacttaacttattttattttctcagtttaattccttaattattaagtgtgtcaatttggtctcataagtcttctgccgtttact 38419035  T
Q  101 gttttggtaatctccgttag 120  Q
    ||||| || |||||||||||    
T  38419034 gttttagtcatctccgttag 38419015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 43419492 - 43419397
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtt 96  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||| |||||||||| || ||||| ||||| ||||    
T  43419492 taatacatctcccggtcccttaacttattttattttctcagtttcgtcccttaactataaagtgtctcaatttggtcccttaactcttctgccgtt 43419397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 40146611 - 40146508
Alignment:
Q  141 accccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattga 240  Q
    ||||||| ||||| |||||||||||  | |||||||| |||||||||||| |||| ||||||||| ||||| || |||||||||| || |||||||||||    
T  40146611 accccttgtccacatgtcatttaagtttagtgatcaagggctggatttagcaagcgcacaaatatacaatggacgcacaacatatgattatttctattga 40146512  T
Q  241 attt 244  Q
    ||||    
T  40146511 attt 40146508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43708835 - 43708910
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||||||||||||||||||||||| || ||||||||  ||| ||||||||||| ||||||||||||||    
T  43708835 taatacatcccccggtctcttaacttattttaatttctcagtttagtccattaactattaaatgtttcaatttggt 43708910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41348238 - 41348320
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    |||||||||||| ||||  |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| | ||||||    
T  41348238 taatacatcccctggtcctttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttgatcccataa 41348320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 6138996 - 6139115
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||| ||| || ||||||||||||||||| ||||||||  |||||||| |||||| ||| ||||||||||  ||||||| || ||| ||||| |    
T  6138996 taatacatcctccgatcccttaacttattttattttctcagtttggtcccttaattattaaatgtctcaatttggtctcataactcttatgttgtttatt 6139095  T
Q  101 gttttggtaatctccgttag 120  Q
     ||||||| ||||| |||||    
T  6139096 attttggtcatctctgttag 6139115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11482795 - 11482870
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||| ||||||| |||||||||||||| || ||||||||  ||||||||||||||| ||||||||||||||    
T  11482795 taatacatctcccggtcccttaacttattttaatttctcagtttggtcccttaactattaaatgtttcaatttggt 11482870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 50530520 - 50530609
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    ||||||||||||||||| ||||||||  ||| ||||||||||||||| ||||  |||| |||||||| |||| ||||||||| |||||||    
T  50530520 cttaacttattttattttctcagtttggtcctttaactattaagtgtctcaaaatggtcccataactcttctatcgtttactattttggt 50530609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 5688708 - 5688557
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccct 146  Q
    |||| ||||||| |||||| ||||||||||||||||| | || ||||||||||| ||||||| |||||||||||        |||||  ||||||| | |    
T  5688708 tcccctaactataaagtgtctcaatttggttccataaatcttatgtcgtttactattttggtcatctccgttag-tattttgcaaaatttgttaactcat 5688610  T
Q  147 tatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    | ||||||||||| |||||| || ||||||| || |||||||| ||||||||||    
T  5688609 t-tccacgtgtcacttaagattgatgatcaacggttggatttataaagcacaca 5688557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 41349630 - 41349560
Alignment:
Q  13 cggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| | ||||||    
T  41349630 cggtcccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttgatcccataa 41349560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43418032 - 43418106
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttgg 75  Q
    ||||||||||||| |||  |||| ||||||||||| ||||||||  |||||||||||| ||||||||||||||||    
T  43418032 taatacatcccccagtcctttaaattattttattttctcagtttggtcccttaactataaagtgtttcaatttgg 43418106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 1273504 - 1273353
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccct 146  Q
    |||| ||||||| |||||| |||||||||| |||||| | || |||||||| || |||||||  ||||||||||        ||||| |||||| | | |    
T  1273504 tcccctaactataaagtgtctcaatttggtcccataagtcttatgtcgtttgctattttggtcctctccgttagtattttg-caaaatctgttacctcat 1273406  T
Q  147 tatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    | |||||||||||||||||| |||||||||| || |||||||| ||||||||||    
T  1273405 t-tccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 1273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26045131 - 26045203
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaattt 73  Q
    ||||||||||||||||| |||||||||||||| || |||||| |  |||||||||||||||  ||||||||||    
T  26045131 taatacatcccccggtcccttaacttattttaatttctcagtgtggtcccttaactattaaacgtttcaattt 26045203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 29833518 - 29833606
Alignment:
Q  150 ccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||| ||||| |||||| |||||||||| |||| |||||  |||| |||||| ||| ||||| || |||||||||||||||||||||||    
T  29833518 ccacatgtcaattaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatggactcacaacatataatcatttctatt 29833606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 30672041 - 30671946
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| ||| |||||||| |||||||||| |||| |||||  |||| |||||||||| |||||  | ||||||||||||| |||||||||    
T  30672041 cccttgtccacatgttatttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacatataataatttctatt 30671946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47573761 - 47573686
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| |||||||||||||| || |||||| |  |||||||||||||||  |||| ||||||||    
T  47573761 taatacatcccccggtcccttaacttattttaatttctcagtgtggtcccttaactattaaacgttttaatttggt 47573686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 47242964 - 47243026
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||| |||||||||||||| || |||||||| |||||||||||||||| ||||| ||||||||    
T  47242964 ggtcccttaacttattttaatttctcagtttaatcccttaactattaaatgttttaatttggt 47243026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 6140411 - 6140358
Alignment:
Q  67 tcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||||||||||||||| |||||||||||||| ||||||| || ||||||||    
T  6140411 tcaatttggttccataactcttctgtcgtttactattttggtcatttccgttag 6140358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 5687220 - 5687292
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    |||||||||||| |||||| |||||||||| |||||| | || || |||||||| ||||||| ||||||||||    
T  5687220 tcccttaactataaagtgtctcaatttggtcccataaatcttttgccgtttactattttggtcatctccgtta 5687292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 29834402 - 29834314
Alignment:
Q  150 ccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||| |||||||||||| |||||||||| ||||  ||||  |||| |||||| ||| ||||| || |||||||||||||||||| ||||    
T  29834402 ccacatgtcatttaagattggtgatcaagggctatatttgaaaagtacacaagtatacaatggactcacaacatataatcatttttatt 29834314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 35787846 - 35787914
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||| || |||||||||||||| |||||| | ||||||||||||| ||||||||  ||||||||||    
T  35787846 taactataaaatgtttcaatttggtcccataaatcttctgtcgtttaccgttttggtcctctccgttag 35787914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43709990 - 43709916
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||| |||| |||||||||||||| || |||||| |  |||||||||||||||  |||||||||||||    
T  43709990 taatacatcccc-ggtcccttaacttattttaatttctcagtgtagtcccttaactattaaacgtttcaatttggt 43709916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47572586 - 47572660
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||| | || |||||||||||||| || ||||| ||  ||||||||||||||| ||||||||||||||    
T  47572586 taatacatcccc-gatcccttaacttattttaatttctcagcttagtcccttaactattaaatgtttcaatttggt 47572660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 526682 - 526600
Alignment:
Q  156 gtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||||||||| |||||||||| ||||  ||||  |||| |||||| ||| |||||  | |||||||||||||||||||||||    
T  526682 gtcatttaagattggtgatcaagggctaaatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttctatt 526600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 86868 - 86921
Alignment:
Q  67 tcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||||||| |||||| ||||||| ||||||||||||||||  ||||||||||    
T  86868 tcaatttggtcccataaatattctgccgtttactgttttggtcttctccgttag 86921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5417303 - 5417376
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttg 74  Q
    ||||||||| |  |||| |||||||||||||| ||  |||||||  ||||||||||||||| ||||||||||||    
T  5417303 taatacatctcttggtcccttaacttattttaatttttcagtttggtcccttaactattaaatgtttcaatttg 5417376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 11113787 - 11113860
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||||||||| |||||| ||||||||||  ||||||| ||||| |||||||  ||||||| || ||||||||    
T  11113787 tcccttaactataaagtgtctcaatttggtctcataactcttctgccgtttaccattttggtcatttccgttag 11113860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 26393199 - 26393146
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttac 99  Q
    |||| |||||||| |||||| |||||||||| |||||||| |||||||||||||    
T  26393199 atcctttaactataaagtgtctcaatttggtcccataactcttctgtcgtttac 26393146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 48206207 - 48206399
Alignment:
Q  49 ccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccctta 148  Q
    |||||| ||| ||||||||||||||| | | |||||| ||||  |||||||| ||||||| || | ||||||        ||||||| || ||||| |||    
T  48206207 ccttaattataaagtgtttcaatttgatcctataacttttctaccgtttactattttggtcatttacgttagttttttt-caaaaaccgt-aacccatta 48206304  T
Q  149 tccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattgaatt 243  Q
    ||||| ||||| ||||||  | |||||||  | | |||||||||||| |||| |||| |||||||  |||||||||| || ||||||||| ||||    
T  48206305 tccacatgtcacttaagatggatgatcaagagttagatttagaaagcgcacatatatacaatgaattcacaacatatgattatttctattaaatt 48206399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 4373522 - 4373602
Alignment:
Q  149 tccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca-aatattcaatgaacccacaacatataat 228  Q
    ||||||||||||||| || ||||||| |||||||||||||  ||||||||||   ||| ||||| || |||||||||||||    
T  4373522 tccacgtgtcatttaggattggtgattaatggctggatttgaaaagcacacatggtatacaatggactcacaacatataat 4373602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 23153210 - 23153142
Alignment:
Q  171 tgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattg 239  Q
    ||||||| || |||||||  ||| ||||||| ||| |||||||| ||||||||||||| ||||||||||    
T  23153210 tgatcaagggttggatttgaaaaacacacaattatacaatgaactcacaacatataataatttctattg 23153142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 38370340 - 38370400
Alignment:
Q  60 aagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||| ||||||||||  ||||||| |||||||||||||  ||||||| |||||||||||    
T  38370340 aagtgtatcaatttggtctcataactcttctgtcgtttaccattttggtcatctccgttag 38370400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 44160527 - 44160475
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatccctta 53  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||  |||||||    
T  44160527 taatacatcctccggtcccttaacttattttattttctcagtttggtccctta 44160475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 47606570 - 47606486
Alignment:
Q  150 ccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacac-aaatattcaatgaacccacaacatataatcattt 233  Q
    |||||||||| ||| || |||||||||| || |||||||| ||||||||| |||| | |||| ||| |||||||||| |||||||    
T  47606570 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaaaatttacaataaactcacaacatatgatcattt 47606486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 936357 - 936452
Alignment:
Q  143 cccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| ||||| |||||||||||| ||||||||||   || |||||  |||| |||||| ||| ||||   | |||||||||||||||||||||||    
T  936357 cccttgtccacatgtcatttaagattggtgatcaacaactagatttgaaaagtacacaagtatacaataggctcacaacatataatcatttctatt 936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 15446728 - 15446548
Alignment:
Q  60 aagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag---nnnnnnnncaaaaactgttaaccccttatccacgtg 156  Q
    ||||||||||||||||| |||||| | ||||  |||||||| |||||||  ||||||||||           ||||||| | ||| ||||| ||||| ||    
T  15446728 aagtgtttcaatttggtcccataaattttctaccgtttactattttggtcctctccgttagtttttctttttcaaaaacagctaa-cccttgtccacatg 15446630  T
Q  157 tcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||||||||| |||||||||| || | |||||  |||| ||||||  || |||||  | |||||||||| ||||||||||||    
T  15446629 tcatttaagattggtgatcaagggtttgattttaaaagtacacaaccatacaatgggctcacaacatatgatcatttctatt 15446548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50496994 - 50497069
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| || ||| || ||||||||||| || ||||||||  | ||||||||||||| ||||| ||||||||    
T  50496994 taatacatcctccagtccctcaacttattttaatttctcagtttagttccttaactattaaatgttttaatttggt 50497069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50498089 - 50498014
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| |||||| ||| |||||||||| || |||||| |  |||||||| ||||||  |||||||||||||    
T  50498089 taatacatcctccggtcccttcacttattttaatttctcagtgtggtcccttaattattaaacgtttcaatttggt 50498014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 55953823 - 55953772
Alignment:
Q  149 tccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    |||||||||||||||||| |||||||||| || || ||||| ||||||||||    
T  55953823 tccacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 55953772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 11115051 - 11114978
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| |||| | |||||||||| |||||||| |||||||||||||  ||||||   ||||||||||    
T  11115051 tcccctaactataaagtatctcaatttggtcccataactcttctgtcgtttaccattttggacctctccgttag 11114978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 39592393 - 39592288
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatct 113  Q
    |||| ||||||||||||||| |  ||| |||  |||| ||||||| |||||| |||| ||||| |  ||  | ||||||||||||||||||||||  |||    
T  39592393 ggtcccttaacttattttatgttttcactttagtcccctaactataaagtgtctcaaattggtccattatgtcttctgtcgtttactgttttggttctct 39592294  T
Q  114 ccgtta 119  Q
    ||||||    
T  39592293 ccgtta 39592288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 55952870 - 55952931
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||| ||||||| |||||||||||||||||  ||||||| || ||||||||| | |||||||    
T  55952870 tcccctaactataaagtgtttcaatttggtctcataactcttatgtcgtttattattttggt 55952931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 17494145 - 17494201
Alignment:
Q  20 ttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||| |||||||| || |||| |||  ||||||||||||||||||||| ||||||||    
T  17494145 ttaatttattttaatttctcattttggtcccttaactattaagtgttttaatttggt 17494201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 12863035 - 12862917
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| | |||||| |||||  |||||||    
T  12863035 taatacatctctcggtctcttaacttattttattttctcagtttgatcccttaactattaagtgtctcaatttggtcctataactcttctgctgtttact 12862936  T
Q  101 gttttggtaatctccgtta 119  Q
     |||||||  |||||||||    
T  12862935 attttggtcctctccgtta 12862917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 22819666 - 22819559
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||| ||||| | ||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||    
T  22819666 taatacatctcccggccccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataactcttctgccgtttact 22819567  T
Q  101 gttttggt 108  Q
     |||||||    
T  22819566 attttggt 22819559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 46 - 258
Target Start/End: Complemental strand, 40059400 - 40059187
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnn--caaaaactgttaacc 143  Q
    ||||| |||||||||||||||| || ||||| | |||||| ||||| ||||||   ||||||| ||||||||||           ||||||| |||||||    
T  40059400 atcccctaactattaagtgttttaaattggtccaataactcttctgccgtttatcattttggtgatctccgttaattttttttttcaaaaaccgttaacc 40059301  T
Q  144 ccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattgaatt 243  Q
    | || | |||||||||||||||| || |||||||  |||||||||||||||| |||| |||| |||||||| ||||||||||||| ||||||||||||||    
T  40059300 c-ttgttcacgtgtcatttaagattgatgatcaagagctggatttagaaagcgcacacatatacaatgaactcacaacatataattatttctattgaatt 40059202  T
Q  244 ttatacaaataaaaa 258  Q
    || || || ||||||    
T  40059201 ttctaaaattaaaaa 40059187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 12831055 - 12830937
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| | |||||| |||||  |||||||    
T  12831055 taatacatctctcggtcccttaacttattttattttctcagtttgatcccttaactattaagtgtctcaatttggtcctataactcttctgctgtttact 12830956  T
Q  101 gttttggtaatctccgtta 119  Q
     |||||||  |||||||||    
T  12830955 attttggtcctctccgtta 12830937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 15857725 - 15857616
Alignment:
Q  11 cccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaa 110  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||| ||||||||||||||| | |||||| | || ||||||||||  ||||||| |    
T  15857725 cccggtcccttaacttattttattttctcagtttggtcccttaactataaagtgtttcaatttgttcccataaatcttatgtcgtttaccattttggtca 15857626  T
Q  111 tctccgttag 120  Q
    ||||||||||    
T  15857625 tctccgttag 15857616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11907278 - 11907203
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| |||||||||||||| || ||||||||  ||||||||||||||| ||||||||||||||    
T  11907278 taatacatcccccggtcccttaacttattttaatttctcagtttggtcccttaactattaaatgtttcaatttggt 11907203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 32734132 - 32734249
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||| ||||  ||||||||||||||||  |||||||  |||||||||||||| |||| | |||||||| |||||||| ||||||||||||||    
T  32734132 taatacatcccc-ggtcctttaacttattttattttttcagtttggtcccttaactatta-gtgtcttaatttggtcccataactcttctgtcgtttact 32734229  T
Q  101 gttttggtaatctccgttag 120  Q
     ||||||| || ||||||||    
T  32734230 attttggtcatttccgttag 32734249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 42510113 - 42510232
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||| | || ||||| |||||||||||  |||||||  |||||||||||| |||||| |||||||||| |||||| | ||||| ||||||||    
T  42510113 taatacatcccctgatcccttaatttattttattttttcagtttggtcccttaactataaagtgtctcaatttggtcccataaatcttctgccgtttact 42510212  T
Q  101 gttttggtaatctccgttag 120  Q
     |||||||  ||||||||||    
T  42510213 attttggttctctccgttag 42510232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39134666 - 39134743
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttc 78  Q
    ||||||||||||||||| ||||||||||||||  | ||||||||  |||||||||||||||  |||||||||||||||    
T  39134666 taatacatcccccggtcccttaacttattttaaattctcagtttggtcccttaactattaaacgtttcaatttggttc 39134743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 40058032 - 40058136
Alignment:
Q  16 tctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctcc 115  Q
    ||||||||||||||||   |  ||| ||| ||||||||||||||||||||||||| |||||  ||||||| ||||| |||||||  ||||||| ||||||    
T  40058032 tctcttaacttatttttggttttcattttgatcccttaactattaagtgtttcaaattggtctcataactcttctgccgtttaccattttggtcatctcc 40058131  T
Q  116 gttag 120  Q
    |||||    
T  40058132 gttag 40058136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 24070404 - 24070479
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| ||||| |||||||| || |||||| | ||||||||||||||||  |||||||||||||    
T  24070404 taatacatcccccggtcccttaatttattttaatttctcagtgtgatcccttaactattaaacgtttcaatttggt 24070479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 42511783 - 42511666
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| |||  ||| ||||| |||||||||||  |||||||  |||||||||||| |||||| |||||||| |||||||| | ||||| ||||| ||    
T  42511783 taatacattccctagtcccttaatttattttattttttcagtttggtcccttaactataaagtgtctcaatttgcttccataaatcttctgccgtttcct 42511684  T
Q  101 gttttggtaatctccgtt 118  Q
     ||||||  |||||||||    
T  42511683 attttggctatctccgtt 42511666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39135765 - 39135690
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||| |||| ||||||  ||||||||||||| || ||||||||  ||||||||||||||| ||||||||||||||    
T  39135765 taatagatcctccggtcctttaacttattttaatttctcagtttgctcccttaactattaaatgtttcaatttggt 39135690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 7426658 - 7426744
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgtttt 105  Q
    ||||| ||||||||||| || ||||| ||||||||| |||||||||| ||||| ||||||||||| | | ||| | |||||||||||    
T  7426658 cttaatttattttattttcttagtttaatcccttaattattaagtgtgtcaatatggttccataagtctactgccatttactgtttt 7426744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 8188304 - 8188242
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||| |||||||||||||||||  ||||||| |||| ||||||||||||||| ||||||||||    
T  8188304 ggtcccttaacttattttattttttcagtttgatcctttaactattaagtgtgtcaatttggt 8188242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 243
Target Start/End: Original strand, 26911284 - 26911398
Alignment:
Q  129 caaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataat 228  Q
    ||||||| |||||||| |||||||||||||| ||||||    ||||||| || |||||||||||||| |||| ||||  ||||||| | |||||||| ||    
T  26911284 caaaaaccgttaacccattatccacgtgtcacttaagatgaatgatcaagggttggatttagaaagcgcacatatatagaatgaactcgcaacatatgat 26911383  T
Q  229 catttctattgaatt 243  Q
     ||||| ||| ||||    
T  26911384 tatttcaattaaatt 26911398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 20988844 - 20988925
Alignment:
Q  157 tcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||||||||| |||||||||| |||| |||||  |||| |||||| ||| |||||  | |||||||||||||||||||||||    
T  20988844 tcatttaagattggtgatcaaaggctagatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttctatt 20988925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 18678020 - 18678082
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    ||||| ||||||| |||||| |||||||||| |||||| | ||||||||||||| ||||||||    
T  18678020 atcccctaactataaagtgtctcaatttggtcccataaatcttctgtcgtttaccgttttggt 18678082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 15615026 - 15614902
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaaccccttatcc 151  Q
    ||||||| |||||| ||||||||||||||||| | ||||| |||||||| |||||||  |||| |||||        ||||||  ||||| ||||| |||    
T  15615026 taactataaagtgtctcaatttggttccataaattttctgccgtttactattttggtcctctctgttagtttattttcaaaaatagttaa-cccttgtcc 15614928  T
Q  152 acgtgtcatttaagagtggtgatcaa 177  Q
    ||  ||||||||||| ||||||||||    
T  15614927 acaagtcatttaagattggtgatcaa 15614902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22818159 - 22818215
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaacta 57  Q
    |||||||||| |||||| ||||||||||||| |||| ||||||| ||| ||||||||    
T  22818159 taatacatcctccggtcccttaacttattttgtttgttcagtttgatctcttaacta 22818215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 24761820 - 24761740
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttac 99  Q
    ||||||||||||||||| || |||||  |||||||| |||||||||| |||||||| |  |||||||  |||| |||||||    
T  24761820 cttaacttattttattttcttagtttagtcccttaattattaagtgtctcaatttgatctcataactcgtctgccgtttac 24761740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29221189 - 29221256
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttca 69  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||  |  ||||||||||||||||||||    
T  29221189 taatacatcccccagtcttttaacttattttaatttctcagtttggt-tcttaactattaagtgtttca 29221256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 27894127 - 27894033
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||| ||||||||||||| | |  ||| |||  |||| ||||||| |||||||||||||||||  ||||| | ||| |||||||||| |||||||    
T  27894127 ggtcgcttaacttattttttgttttcactttggtcccctaactataaagtgtttcaatttggtctcataaattttccgtcgtttactattttggt 27894033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 42979498 - 42979564
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtt 118  Q
    ||||||| ||||||||||||||||| | |||| | ||||| |||||||| |||||||  ||||||||    
T  42979498 taactataaagtgtttcaatttggtccaataattcttctgccgtttactattttggtcctctccgtt 42979564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 8187176 - 8187236
Alignment:
Q  12 ccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaattt 73  Q
    |||||| ||||| ||||||||||| |||||||| || ||||||||||||| ||| |||||||    
T  8187176 ccggtcccttaatttattttattttctcagtttaat-ccttaactattaaatgtgtcaattt 8187236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 8284343 - 8284286
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||||| || ||||||||  || |||||||||||| ||||| ||||||||    
T  8284343 cttaacttattttaatttctcagtttagtctcttaactattaaatgttttaatttggt 8284286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 15510210 - 15510145
Alignment:
Q  173 atcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| |||| |||||  |||| |||||| ||| ||||| || |||||||||||||||||||||||    
T  15510210 atcaagggctagatttgaaaagtacacaagtatacaatggactcacaacatataatcatttctatt 15510145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 22819564 - 22819515
Alignment:
Q  71 tttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||| |||||||| ||||| |||||||| ||||||| |||||||||||    
T  22819564 tttggtcccataactcttctgccgtttactattttggtcatctccgttag 22819515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23679146 - 23679223
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttc 78  Q
    |||||||||| |||||| || || |||||||| ||  |||||||  |||||||||||||||  |||||||||| ||||    
T  23679146 taatacatcctccggtccctaaatttattttaatttttcagtttggtcccttaactattaaacgtttcaatttagttc 23679223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 23855666 - 23855589
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttc 78  Q
    |||||||||| |||||| || || |||||||| ||  |||||||  |||||||||||||||  |||||||||| ||||    
T  23855666 taatacatcctccggtccctaaatttattttaatttttcagtttggtcccttaactattaaacgtttcaatttagttc 23855589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 38471334 - 38471395
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||||||||| | || ||||||||||||||||||||| | ||||  |||||||| |||||||    
T  38471334 tcccttaactttaaattgtttcaatttggttccataaatcttcttccgtttactattttggt 38471395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 2167576 - 2167524
Alignment:
Q  56 tattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    ||||||||||||||||||||| |||||| | ||||| |||||| | |||||||    
T  2167576 tattaagtgtttcaatttggtcccataaatcttctgccgtttattattttggt 2167524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11906354 - 11906414
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaa 61  Q
    ||||||||| ||||||  |||||||||| ||| || ||||||||  |||||||||||||||    
T  11906354 taatacatctcccggttccttaacttatgttaatttctcagtttggtcccttaactattaa 11906414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12861548 - 12861604
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaacta 57  Q
    |||||||||| |  ||| ||||||||||||||||| ||||||||  |||||||||||    
T  12861548 taatacatcctctcgtcccttaacttattttattttctcagtttggtcccttaacta 12861604  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 257
Target Start/End: Original strand, 33458435 - 33458563
Alignment:
Q  129 caaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataat 228  Q
    ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||| |||| ||||||||| ||||| ||  ||||||||| ||    
T  33458435 caaaaactgttaaccccttgtccacgtgtcatttaagattagtgatcaagggctggatttagtaagcgcacaaatatacaatggacttacaacatatgat 33458534  T
Q  229 catttctattgaattttatacaaataaaa 257  Q
     | |||||||||||||  || ||||||||    
T  33458535 tacttctattgaatttcctaaaaataaaa 33458563  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4167450 - 4167554
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||| ||| || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| | | |||| | ||||||||||||||    
T  4167450 taatacatcctccgatcccttaacttattttattttctcagtttaatcccttaactattaagtgtgtcaatttgatcctataagtcttctgtcgtttact 4167549  T
Q  101 gtttt 105  Q
    |||||    
T  4167550 gtttt 4167554  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 35315327 - 35315235
Alignment:
Q  13 cggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgtttt 105  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| |||||||| | |||||||||| |||||| | |||||||||||||||||||    
T  35315327 cggtcccttaacttattttattttctcagtttgatcccttaattattaagtatgtcaatttggtcccataagtcttctgtcgtttactgtttt 35315235  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10257503 - 10257401
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||| | ||| ||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||| |||||||| |  |||||||||||    
T  10257503 taatacatcccactgtcccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataactct--tgtcgtttact 10257406  T
Q  101 gtttt 105  Q
     ||||    
T  10257405 atttt 10257401  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 30223946 - 30223858
Alignment:
Q  150 ccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||| |||||||||||| |||||||||| |||| |||||  |||| |||||| ||| ||||| || |||||||||||||||||||||||    
T  30223946 ccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatggactcacaacatataatcatttctatt 30223858  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4168966 - 4168891
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||| || | || ||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||    
T  4168966 taatacatctcctgatcccttaacttattttattttctcagtttgatcccttaactataaagtgtgtcaatttggt 4168891  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 22060513 - 22060659
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaaccccttatcc 151  Q
    ||||||| |||||| |||||||||||||| || | || || |||||||| ||||||| |||||||||||        ||||| |||||||| | || |||    
T  22060513 taactataaagtgtctcaatttggttccacaagtcttatgccgtttactattttggtcatctccgttag-tattttacaaaatctgttaactcatt-tcc 22060610  T
Q  152 acgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    ||| ||||||||||| |||||||||| || |||||||| ||||||||||    
T  22060611 acgagtcatttaagattggtgatcaacggttggatttaaaaagcacaca 22060659  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 40881090 - 40881165
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| |||||||||||||| || |||||| |  |||||||||||||||  |||||||||||||    
T  40881090 taatacatcccccggtcccttaacttattttaatttctcagtgtggtcccttaactattaaccgtttcaatttggt 40881165  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47537157 - 47537082
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||| ||||||||||| ||||||||||||||  | ||||||||  ||||||||||||||| ||||||||||||||    
T  47537157 taatatatcccccggtcccttaacttattttaacttctcagtttggtcccttaactattaaatgtttcaatttggt 47537082  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47927378 - 47927453
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||| | ||||||||||||||||||||| || ||||||||  ||||||||||||||| |||||| |||||||    
T  47927378 taatacatgctccggtctcttaacttattttaatttctcagtttagtcccttaactattaaatgtttcgatttggt 47927453  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 132116 - 132034
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||   |||| ||||||||||||||||| ||||||||  ||||||||||||||||||| || ||||||| ||||||    
T  132116 taatacatccttaggtcccttaacttattttattttctcagtttggtcccttaactattaagtgtgtcgatttggtcccataa 132034  T

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Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35484427 - 35484337
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctg 91  Q
    ||||||||| || |||| ||||||||||||||||| ||||||||  ||| |||||||| |||| ||||||||| || |||||||| |||||    
T  35484427 taatacatctccaggtcccttaacttattttatttcctcagtttggtcctttaactataaagtatttcaatttagtcccataactcttctg 35484337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 43936206 - 43936022
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaaccccttatcc 151  Q
    ||||||| |||| | | ||||||||  ||||| | |||||||||||||| |||||||  ||||||||||        ||||||| |||||||  || |||    
T  43936206 taactataaagtttcttaatttggtctcataattcttctgtcgtttactattttggtcctctccgttagtttttt--caaaaacagttaaccaattgtcc 43936109  T
Q  152 acgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    || |||||||||| | || |||||||||| | |||||  |||| |||||| ||| |||||| | |||||||||| ||||||||||||    
T  43936108 acatgtcatttaaaattgatgatcaatggttagatttgaaaagtacacaagtatacaatgagctcacaacatatgatcatttctatt 43936022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 10256141 - 10256229
Alignment:
Q  20 ttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||| ||||  ||||  ||||||| |||| ||||||| | |||||||    
T  10256141 ttaacttattttattttctcagtttggtcccttaactattaagtgtctcaaaatggtctcataactcttctatcgtttagtattttggt 10256229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 30222792 - 30222880
Alignment:
Q  150 ccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||| |||||||||||| |||||||||| | || |||||  |||| |||||| ||| ||||| || |||||||||||||||||||||||    
T  30222792 ccacatgtcatttaagattggtgatcaaggactagatttgaaaagtacacaagtatacaatggactcacaacatataatcatttctatt 30222880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35483572 - 35483648
Alignment:
Q  1 taatacatcccccggtctcttaacttatttta-tttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| ||||| ||||||||||||||| |||  |||||||  |||||||||||| |||||||||||||||||    
T  35483572 taatacatcctccggtttcttaacttattttatttttttcagtttggtcccttaactataaagtgtttcaatttggt 35483648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13287111 - 13287036
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||||| || ||||  |||||||| || |||  ||| |||||||||||||||||||||||||||||||    
T  13287111 taatacatcccccgatcccttagtttattttaatttctctatttgatcccttaactattaagtgtttcaatttggt 13287036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29344163 - 29344238
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||| ||||||| |||||||||||||| || |||||||| | ||||||||||||||  |||| ||||||||    
T  29344163 taatacatctcccggtcccttaacttattttaatttctcagtttgaccccttaactattaaacgttttaatttggt 29344238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 35128182 - 35128112
Alignment:
Q  129 caaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    ||||| |||||||| |||| |||||||||||||||||| |||||||||| || |||||||| ||||||||||    
T  35128182 caaaatctgttaactcctt-tccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 35128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 41126385 - 41126474
Alignment:
Q  149 tccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||| |||||||||||| |||||||||| |||| |||||  |||| |||||| ||| ||||   | |||||||||||||||||||||||    
T  41126385 tccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaataggctcacaacatataatcatttctatt 41126474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 7148124 - 7148056
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||| ||||||||||||||||| || ||| | || |||||||||||||||||||  ||||||||||    
T  7148124 taactataaagtgtttcaatttggtcccttaaatcttatgtcgtttactgttttggttctctccgttag 7148056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37781956 - 37782031
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||| ||||| ||||| |||||||| || ||||||||  | | ||||||||||| ||||||||||||||    
T  37781956 taatacatccctcggtcccttaaattattttaatttctcagtttggttctttaactattaaatgtttcaatttggt 37782031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47928547 - 47928472
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||| | ||| |||||||||||||| || || |||||  || |||||||||||| ||||||||||||||    
T  47928547 taatacatccctccgtcccttaacttattttaatttcttagtttagtctcttaactattaaatgtttcaatttggt 47928472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 36673811 - 36673717
Alignment:
Q  144 ccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||| ||||| |||||||||||| |||||||||| |||| | |||  |||| |||||| ||| |||||  | |||||||||||||||||| ||||    
T  36673811 ccttgtccacatgtcatttaagattggtgatcaagggctaggtttgaaaagtacacaagtatacaatgggctcacaacatataatcatttatatt 36673717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 33071743 - 33071682
Alignment:
Q  13 cggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttg 74  Q
    ||||| |||||||||||||| || ||||||||  | ||||||||||||| ||||||||||||    
T  33071743 cggtcccttaacttattttaatttctcagtttagttccttaactattaaatgtttcaatttg 33071682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 14206723 - 14206791
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||| || |||||||||||||| | |||| | |||||||||||||| ||||| | |||||||||||    
T  14206723 taactataaaatgtttcaatttggtcctataaatcttctgtcgtttactattttgctcatctccgttag 14206791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 14215413 - 14215481
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||| || |||||||||||||| | |||| | |||||||||||||| ||||| | |||||||||||    
T  14215413 taactataaaatgtttcaatttggtcctataaatcttctgtcgtttactattttgctcatctccgttag 14215481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 29408264 - 29408320
Alignment:
Q  20 ttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||| ||||||||||| |||||||| ||||||||||||| || |||||||| |||||    
T  29408264 ttaatttattttattttctcagtttgatcccttaactataaaatgtttcaaattggt 29408320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 29409336 - 29409280
Alignment:
Q  20 ttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||||||| |||||||| ||||||||||||| || ||| |||| |||||    
T  29409336 ttaacttattttattttctcagtttgatcccttaactataaaatgtctcaaattggt 29409280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 41618460 - 41618380
Alignment:
Q  158 catttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    ||||||||| |||||||||| || | |||||  |||| |||||| ||| |||||  | |||||||||||||||||||||||    
T  41618460 catttaagattggtgatcaagggttagatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttctatt 41618380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 22061785 - 22061715
Alignment:
Q  129 caaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    ||||| |||||||| ||||  ||||||||||||||||| ||| |||||| || |||||||| ||||||||||    
T  22061785 caaaacctgttaactccttg-ccacgtgtcatttaagattggggatcaacggttggatttaaaaagcacaca 22061715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 27899331 - 27899224
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| || | ||| ||||||||||||||||| || |||||  ||| |||||||| || | | |||||||| | |||||| | || |||||||||||    
T  27899331 taatacattcctcagtcccttaacttattttattttcttagtttggtcctttaactataaaatatctcaatttgatcccataaatcttttgtcgtttact 27899232  T
Q  101 gttttggt 108  Q
     |||||||    
T  27899231 attttggt 27899224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 43007715 - 43007569
Alignment:
Q  52 taactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaaccccttatcc 151  Q
    ||||||| |||||| |||||||||| |||||| | || ||||||||||| |||| ||  ||||||||||        ||||| |||||||| | || |||    
T  43007715 taactataaagtgtctcaatttggtcccataagtcttatgtcgtttactattttagttctctccgttag-tattttgcaaaatctgttaactcatt-tcc 43007618  T
Q  152 acgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
     |||||||||||| | || ||||||| ||||||||||| ||| ||||||    
T  43007617 gcgtgtcatttaaaattgttgatcaacggctggatttacaaaacacaca 43007569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 19279683 - 19279622
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||| ||||||| |||||| |||||||||| |||||| | || ||||||||||| |||||||    
T  19279683 tcccctaactataaagtgtctcaatttggtcccataaattttttgtcgtttactattttggt 19279622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 38406063 - 38406124
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||| ||||||| |||||| ||||  ||||||||||| | ||||| ||||||||||||||||    
T  38406063 tcccctaactataaagtgtctcaaactggttccataaatcttctgacgtttactgttttggt 38406124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 43006430 - 43006503
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| |||||||||||||| |||||||||| || ||| | || || ||||| || ||||||| |||||||||||    
T  43006430 tcccctaactattaagtgtctcaatttggtcccctaagtcttatgccgtttgctattttggtcatctccgttag 43006503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 46675006 - 46674933
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    ||||||||||||| |||||| || ||||||| |||||| | || || |||||||| |||||||  |||||||||    
T  46675006 atcccttaactataaagtgtctcgatttggtcccataaatcttttgccgtttactattttggtcctctccgtta 46674933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 47163278 - 47163386
Alignment:
Q  129 caaaaactgttaaccccttatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataat 228  Q
    |||||| ||||||||| || ||||| |||||||||||| | |||||||| |  | |||||  |||| || ||| ||| ||||| || |||||||||| ||    
T  47163278 caaaaattgttaaccc-ttgtccacatgtcatttaagatttgtgatcaaagattagatttgaaaagtacgcaagtatacaatggactcacaacatatgat 47163376  T
Q  229 catttctatt 238  Q
    ||||||||||    
T  47163377 catttctatt 47163386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 22744791 - 22744863
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    |||| ||||||| ||||||||||||||||| | |||| | || || |||||||| |||||||  |||||||||    
T  22744791 tcccctaactataaagtgtttcaatttggtcctataaatcttatgccgtttactattttggtcttctccgtta 22744863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 27897709 - 27897773
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||||||||| || | ||| || |||||| ||| || |||||||||||||| ||||||    
T  27897709 cttaacttattttattttcttaatttgattccttaattataaaatgtttcaatttggtcccataa 27897773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 29345176 - 29345120
Alignment:
Q  20 ttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||| |||||||| ||  ||||||| |||||||||||||||| ||||| ||||||||    
T  29345176 ttaatttattttaatttttcagtttgatcccttaactattaaatgttttaatttggt 29345120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 8096529 - 8096426
Alignment:
Q  155 tgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattgaattttatacaaata 254  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||| | ||||| || ||||||||||||||||||  ||||||||    
T  8096529 tgtcatttaagattggtgatcaatggctggatttagaaagcacgcaaatatacaataaactcgcaacacatgatcatttctattgaatttcctacaaata 8096430  T
Q  255 aaaa 258  Q
    ||||    
T  8096429 aaaa 8096426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8095346 - 8095452
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||| |||| ||| || |||||||||||    
T  8095346 taatacatcccc-ggtcccttaacttattttattttctcagtttggtcccttaactattaagtgtctcaatttggtcccattactcttttgtcgtttact 8095444  T
Q  101 gttttggt 108  Q
     |||||||    
T  8095445 attttggt 8095452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20308604 - 20308711
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||  | |||||||||||||||||||| ||||||||  |  |||||||||||||||| ||||||||||  ||||||| ||||||||||||||    
T  20308604 taatacatcccttgatctcttaacttattttattttctcagtttagtatcttaactattaagtgtctcaatttggtctcataactcttctgtcgtttact 20308703  T
Q  101 gttttggt 108  Q
     |||||||    
T  20308704 attttggt 20308711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21095237 - 21095344
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||||||  | |||||||||||||||||||| ||||||||  |  |||||||||||||||| ||||||||||  ||||||| ||||||||||||||    
T  21095237 taatacatcccttgatctcttaacttattttattttctcagtttagtatcttaactattaagtgtctcaatttggtctcataactcttctgtcgtttact 21095336  T
Q  101 gttttggt 108  Q
     |||||||    
T  21095337 attttggt 21095344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22619894 - 22619976
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||| ||||||    
T  22619894 taatacatcccacggtcccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataa 22619976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22621251 - 22621169
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  22621251 taatacatccctcggtcccttaacttattttattttctcagtttgatcccttaactattaagtgtggcaatttggtcccataa 22621169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 41522805 - 41522701
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||| || || ||||||||||||||||| |||||||| |||  ||||||||||||||| |||||||||| | |||| | ||||| ||||||||    
T  41522805 taatacatccctcgatcccttaacttattttattttctcagtttaatcatttaactattaagtgtgtcaatttggtcctataagtcttctgccgtttact 41522706  T
Q  101 gtttt 105  Q
    |||||    
T  41522705 gtttt 41522701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 13367149 - 13367048
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtt 118  Q
    |||||||||||||||||  ||| |||  |||||||||||| |||||||| |||||||| |||||| | ||||| |||||||| |||||||  ||||||||    
T  13367149 cttaacttattttattttttcactttggtcccttaactataaagtgttttaatttggtcccataaatcttctgccgtttactattttggtcctctccgtt 13367050  T
Q  119 ag 120  Q
    ||    
T  13367049 ag 13367048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 244
Target Start/End: Complemental strand, 36071449 - 36071252
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccct 146  Q
    ||||||||||||  ||| |||||| ||||| |||||||| ||||  ||||||   ||||||| ||||| |||||        |||| |  |||||||| |    
T  36071449 tcccttaactatagagtatttcaaattggtcccataactcttctaccgtttatcattttggtcatctctgttagttgttttccaaatatcgttaaccctt 36071350  T
Q  147 tatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattgaattt 244  Q
    ||||||||||| |||||| | |||||||||| |||||||||||||  || ||||||||| |||| | | |||||||| | || ||||||||| |||||    
T  36071349 tatccacgtgttatttaaaattggtgatcaagggctggatttagagggcgcacaaatatacaataacctcacaacatgtgattatttctattaaattt 36071252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 34616146 - 34616210
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataa 83  Q
    ||||||||||||||||| |||||||| ||| ||||||||| |||||| |||||||||| ||||||    
T  34616146 cttaacttattttattttctcagtttgatctcttaactataaagtgtctcaatttggtcccataa 34616210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 39220693 - 39220797
Alignment:
Q  16 tctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctcc 115  Q
    ||||||||||||||||| || |||| |||  ||  |||||||||||||||||||||||| |||| ||| | ||||| |||||||| |||| || |||||     
T  39220693 tctcttaacttattttaatttctcattttggtctattaactattaagtgtttcaatttgattccttaagtcttctgccgtttactattttcgttatctct 39220792  T
Q  116 gttag 120  Q
    |||||    
T  39220793 gttag 39220797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9190558 - 9190484
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||| | || |||||||||||||| || ||||||||  ||||||||||||||| ||||||||||||||    
T  9190558 taatacatccccggttc-cttaacttattttaatttctcagtttagtcccttaactattaaatgtttcaatttggt 9190484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 2421392 - 2421303
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    |||||||||||||| ||  |||||||  |||||||| ||||||||||||||||||||| ||| || | ||||| |||||| | |||||||    
T  2421392 cttaacttattttaatttatcagtttagtcccttaaatattaagtgtttcaatttggtcccagaaatcttctgccgtttattattttggt 2421303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 34617312 - 34617231
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccata 82  Q
    |||||||| |||||||| |||||||| |||| ||| | |||||| |||| ||||||||||||||| ||||||| || |||||    
T  34617312 taatacattccccggtcccttaacttttttttttttcccagtttgatccattaactattaagtgtgtcaatttagtcccata 34617231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 36940105 - 36940032
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgtta 119  Q
    ||||| ||||||| |||||||||||||||||  ||||| | ||||| |||||||| ||||||| ||||||||||    
T  36940105 atcccctaactataaagtgtttcaatttggtatcataaatcttctgccgtttactattttggtcatctccgtta 36940032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 8096662 - 8096546
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    ||||||||||||  ||| |||||||||||||||||  |||||||  || ||||||||||||| || | ||||||||  ||||||| || |  ||||||||    
T  8096662 taatacatcccctagtcccttaacttattttattttttcagtttagtctcttaactattaagcgtcttaatttggtctcataactcttttaccgtttact 8096563  T
Q  101 gttttggtaatctccgt 117  Q
     |||||||  |||||||    
T  8096562 attttggtcctctccgt 8096546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4534033 - 4534108
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||| | ||| |||||||||||||| || ||||||||  ||| |||| |||||| ||||||||||||||    
T  4534033 taatacatccctcagtcccttaacttattttaatttctcagtttggtcctttaaatattaaatgtttcaatttggt 4534108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9189393 - 9189468
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| |||||| ||||| |||||||| || |||||| |  |||||||||||||||  |||||||||||||    
T  9189393 taatacatcctccggtcccttaatttattttaatttctcagtgtggtcccttaactattaaacgtttcaatttggt 9189468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12818753 - 12818828
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||| |||| |||||| |||||||||||||| || ||||||||  |||||||||||||||   ||||||||||||    
T  12818753 taatatatccaccggtcccttaacttattttaatttctcagtttggtcccttaactattaaacatttcaatttggt 12818828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12820215 - 12820140
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| || ||||||||||| || |||||||   |||||||||||||||  |||| ||||||||    
T  12820215 taatacatcccccggtccctaaacttattttaatttctcagttcggtcccttaactattaaacgttttaatttggt 12820140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16346098 - 16346173
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||| | | ||| |||||||||||||| || ||||||||  |||||||||||||||  |||||||||||||    
T  16346098 taatacatctctcagtcccttaacttattttaatttctcagtttggtcccttaactattaaacgtttcaatttggt 16346173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 41521316 - 41521391
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||| || | || |||||||||||||||||  ||||||| ||||||||||||| |||||| | ||||||||    
T  41521316 taatacatctcctgatcccttaacttattttattttttcagtttgatcccttaactataaagtgtgttaatttggt 41521391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 24069518 - 24069456
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    ||||||||||||| |||||| |||||||||| |||||||| ||||| |||||||  |||||||    
T  24069518 atcccttaactataaagtgtctcaatttggtcccataactcttctgccgtttaccattttggt 24069456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22914307 - 22914234
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttg 74  Q
    ||||||||  ||||||| |||||||||||||| ||  ||||||| |||| |||||||||||  |||||||||||    
T  22914307 taatacatttcccggtcccttaacttattttaatttttcagtttgatccattaactattaaacgtttcaatttg 22914234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 31623951 - 31624102
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccct 146  Q
    |||| ||||||| ||||||||||||||||| |||||| | || ||||||||| | |||| ||  |||||||||         ||||| |||||||| |||    
T  31623951 tcccctaactataaagtgtttcaatttggtcccataaatcttatgtcgtttattattttagtcctctccgtta-ctatgttgcaaaatctgttaactcct 31624049  T
Q  147 tatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    | ||||||||||| |||||| || ||||||| || |||||| | ||||||||||    
T  31624050 t-tccacgtgtcacttaagattgatgatcaacggttggattaataaagcacaca 31624102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 36756109 - 36756182
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||||||| |||||||||||| ||||  ||||| | || ||||||||||| ||||||| |||||||||||    
T  36756109 tcccataactataaagtgtttcaatctggtcacataaatcttatgtcgtttactattttggtcatctccgttag 36756182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2419873 - 2419929
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaacta 57  Q
    ||||||||| ||||||| ||||| |||||||| || |||||||| ||||||||||||    
T  2419873 taatacatctcccggtcccttaatttattttaatttctcagtttgatcccttaacta 2419929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 35463087 - 35463031
Alignment:
Q  20 ttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||||||||| |||||||| ||||||||||||| || ||| |||| |||||    
T  35463087 ttaacttattttattttctcagtttgatcccttaactataaaatgtctcaaattggt 35463031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 39546735 - 39546675
Alignment:
Q  60 aagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||| |||||||||| |||||| |||| || ||||||| |||||||| |||||||||||    
T  39546735 aagtgtctcaatttggtcccataaatattatgccgtttaccgttttggtcatctccgttag 39546675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 22913209 - 22913264
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttg 74  Q
    |||||||||||||| || |||||||  |||||||||||| ||| ||||||||||||    
T  22913209 cttaacttattttaatttctcagttggatcccttaactagtaaatgtttcaatttg 22913264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 23768602 - 23768527
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    |||||||||| |||||| |||||||||||||| ||  |||||||  |||||| |||||||| ||||| || |||||    
T  23768602 taatacatcctccggtcccttaacttattttagtttttcagtttggtcccttcactattaaatgttttaaattggt 23768527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 7486121 - 7486195
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||||||||| ||||| ||||||||||| |||||| | || ||  ||||||| |||||||  ||||||||||    
T  7486121 atcccttaactataaagtgcttcaatttggtcccataaatcttttgctgtttactattttggtcctctccgttag 7486195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 41866938 - 41867012
Alignment:
Q  46 atcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    ||||||||||||| ||||||||||||||||| |||||| | ||  | | |||||| ||||||| ||||| |||||    
T  41866938 atcccttaactataaagtgtttcaatttggtcccataaattttacgccatttactattttggtcatctctgttag 41867012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 117109 - 117166
Alignment:
Q  63 tgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||||||||||| | |||||| | |||||||||||| |||||||||  ||||||||||    
T  117109 tgtttcaatttgatcccataaatcttctgtcgtttattgttttggtcctctccgttag 117166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 38589967 - 38590016
Alignment:
Q  151 cacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacaca 200  Q
    |||||||||||||||| |||||||||| || || ||||| ||||||||||    
T  38589967 cacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 38590016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 43579693 - 43579754
Alignment:
Q  15 gtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| | | |||| ||   ||||||||||||||| ||||||||||||||    
T  43579693 gtctcttaacttattttttcttctcacttcagtcccttaactattaaatgtttcaatttggt 43579754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31872921 - 31872865
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaacta 57  Q
    ||||||||| |||||||  ||||||||||||| || |||||||| |||||| |||||    
T  31872921 taatacatctcccggtcctttaacttattttaatttctcagtttgatccctcaacta 31872865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 35462685 - 35462721
Alignment:
Q  20 ttaacttattttatttgctcagtttcatcccttaact 56  Q
    |||||||||||||||| |||||||| |||||||||||    
T  35462685 ttaacttattttattttctcagtttgatcccttaact 35462721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45195920 - 45195849
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaattt 73  Q
    |||||||||||| | || |||||||||||||| || ||||||||  |||||||| ||| |||||| |||||||    
T  45195920 taatacatccccag-tcccttaacttattttaatttctcagtttggtcccttaaatataaagtgtctcaattt 45195849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 42451 - 42356
Alignment:
Q  13 cggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggt 108  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||| | |||||| | |||||||||||||| |||||||    
T  42451 cggtcccttaacttattttattttctcagtttgatcccttaactattacgtgtatcaatttgatcccataaatcttctgtcgtttactattttggt 42356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40915 - 40977
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagt 63  Q
    |||||||||||| |||| |||||| | ||||||||  ||||||| ||||||||||||||||||    
T  40915 taatacatcccctggtcccttaaccttttttattttttcagtttgatcccttaactattaagt 40977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 243
Target Start/End: Complemental strand, 2336 - 2141
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttagnnnnnnnncaaaaactgttaacccct 146  Q
    |||| ||| ||| ||||||||||||||||| |||||||| ||||   ||||||| |||||||  | ||||||||        |||||||| ||||||| |    
T  2336 tcccctaattataaagtgtttcaatttggtcccataactcttctactgtttactattttggtcctttccgttagttttttt-caaaaactattaacccat 2238  T
Q  147 tatccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctattgaatt 243  Q
    ||||||||||||| ||||||  | ||||||| || |||||||||| ||| |||| |||| |||||||| || ||||||| || ||||||||| ||||    
T  2237 tatccacgtgtcacttaagatggatgatcaagggttggatttagagagcgcacatatatacaatgaactcaaaacatatgattatttctattaaatt 2141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 17277 - 17173
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttact 100  Q
    |||||||| ||||||||  ||||||||||||||||  |||||||  ||||||||||||||||||| |||||||  | | |||||| ||||||| ||||||    
T  17277 taatacataccccggtcctttaacttattttattttttcagtttggtcccttaactattaagtgtctcaatttaatccaataactcttctgtcatttact 17178  T
Q  101 gtttt 105  Q
     ||||    
T  17177 atttt 17173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15949 - 16019
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaat 71  Q
    |||||||||| |||||| |||||||||||||||||  ||| |||  ||||||| |||| |||| |||||||    
T  15949 taatacatcctccggtcccttaacttattttattttttcactttggtcccttagctataaagtatttcaat 16019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 85193 - 85118
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||||||||||| |||||||||||||| || |||||| |  |||||||||||||||  |||||||||||||    
T  85193 taatacatcccccggtcccttaacttattttaatttctcagtgtggtcccttaactattaaccgtttcaatttggt 85118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 205669 - 205594
Alignment:
Q  1 taatacatcccccggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggt 76  Q
    ||||||||| ||||||| |||||||||||||| || ||||||||  |||||||| ||||||  |||||||||||||    
T  205669 taatacatctcccggtcccttaacttattttaatttctcagtttggtcccttaattattaaacgtttcaatttggt 205594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 1901 - 1989
Alignment:
Q  150 ccacgtgtcatttaagagtggtgatcaatggctggatttagaaagcacacaaatattcaatgaacccacaacatataatcatttctatt 238  Q
    |||| |||||||||||| ||  |||||| |||| |||||  |||| |||||| ||| |||||| | |||||||||||||||||||||||    
T  1901 ccacatgtcatttaagattgaagatcaagggctagatttgaaaagtacacaagtatacaatgagctcacaacatataatcatttctatt 1989  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 77284 - 77180
Alignment:
Q  15 gtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctc 114  Q
    ||||||||||||||||| | |  ||| |||  || | ||||||| ||| ||||||||||||| |||||| ||||||  ||||||||||||||||  ||||    
T  77284 gtctcttaacttattttttgttttcactttggtctcctaactataaagcgtttcaatttggtcccataaatattctaccgtttactgttttggtcttctc 77185  T
Q  115 cgtta 119  Q
    |||||    
T  77184 cgtta 77180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 4317 - 4237
Alignment:
Q  19 cttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttac 99  Q
    ||||||||||||||||| || |||||  |||||||| |||||||||| |||||||| |  |||||||  |||| |||||||    
T  4317 cttaacttattttattttcttagtttagtcccttaattattaagtgtctcaatttgatctcataactcgtctgccgtttac 4237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 732 - 626
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatct 113  Q
    |||| ||||||||||||| | |  ||| |||  |||| ||||||| |||||| ||||||| || |||||| | ||||| |||||||  ||||||| ||||    
T  732 ggtcccttaacttattttttgttatcactttggtcccctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatct 633  T
Q  114 ccgttag 120  Q
    |||||||    
T  632 ccgttag 626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 542 - 648
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatct 113  Q
    |||| ||||||||||||| | |  ||| |||  |||| ||||||| |||||| ||||||| || |||||| | ||||| |||||||  ||||||| ||||    
T  542 ggtcccttaacttattttttgttatcactttggtcccctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatct 641  T
Q  114 ccgttag 120  Q
    |||||||    
T  642 ccgttag 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 9582 - 9476
Alignment:
Q  14 ggtctcttaacttattttatttgctcagtttcatcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatct 113  Q
    |||| ||||||||||||| | |  ||| |||  |||| ||||||| |||||| ||||||| || |||||| | ||||| |||||||  ||||||| ||||    
T  9582 ggtcccttaacttattttttgttatcactttggtcccctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatct 9483  T
Q  114 ccgttag 120  Q
    |||||||    
T  9482 ccgttag 9476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 12955 - 13028
Alignment:
Q  47 tcccttaactattaagtgtttcaatttggttccataactattctgtcgtttactgttttggtaatctccgttag 120  Q
    |||| ||| ||| |||||| ||||||||||  ||||| |||| ||||||||| | |||||||||||||| ||||    
T  12955 tcccataattataaagtgtctcaatttggtctcataaatattttgtcgtttagtattttggtaatctccattag 13028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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