View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15042_low_2 (Length: 601)

Name: NF15042_low_2
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15042_low_2
NF15042_low_2
[»] chr2 (6 HSPs)
chr2 (323-493)||(34805688-34805857)
chr2 (17-66)||(13761749-13761799)
chr2 (18-67)||(24019844-24019894)
chr2 (17-66)||(41877699-41877749)
chr2 (24-70)||(23357113-23357160)
chr2 (17-61)||(10393156-10393201)
[»] chr8 (4 HSPs)
chr8 (17-66)||(39677348-39677398)
chr8 (17-65)||(29189850-29189899)
chr8 (25-66)||(2855062-2855104)
chr8 (17-65)||(3511191-3511240)
[»] chr6 (4 HSPs)
chr6 (18-66)||(22756520-22756569)
chr6 (25-65)||(3832407-3832448)
chr6 (17-65)||(11015563-11015612)
chr6 (25-65)||(23648174-23648215)
[»] chr5 (3 HSPs)
chr5 (17-63)||(16474746-16474793)
chr5 (17-61)||(11063023-11063068)
chr5 (25-68)||(648508-648552)
[»] chr4 (7 HSPs)
chr4 (18-64)||(21633949-21633996)
chr4 (18-65)||(36196837-36196885)
chr4 (25-66)||(6902249-6902291)
chr4 (25-69)||(20511382-20511427)
chr4 (17-66)||(35190741-35190790)
chr4 (25-65)||(41864207-41864248)
chr4 (26-65)||(30623376-30623416)
[»] chr1 (2 HSPs)
chr1 (25-67)||(28429016-28429059)
chr1 (17-66)||(7781273-7781323)
[»] scaffold0343 (1 HSPs)
scaffold0343 (17-66)||(9202-9252)
[»] chr7 (2 HSPs)
chr7 (17-70)||(23029758-23029812)
chr7 (13-41)||(19757511-19757539)
[»] chr3 (7 HSPs)
chr3 (17-66)||(31558327-31558377)
chr3 (17-65)||(2187325-2187374)
chr3 (17-85)||(5505805-5505874)
chr3 (17-68)||(44947330-44947382)
chr3 (17-66)||(193370-193420)
chr3 (25-68)||(37713271-37713315)
chr3 (17-60)||(39719305-39719349)
[»] scaffold0009 (1 HSPs)
scaffold0009 (17-65)||(191986-192035)
[»] scaffold0016 (1 HSPs)
scaffold0016 (17-68)||(84225-84277)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 323 - 493
Target Start/End: Complemental strand, 34805857 - 34805688
Alignment:
Q  323 aactaaattagtagaagctacaaagaggcaagatgttagagcctttcaatcttgtccttatctttctctttactttgcaattcaaggtattgctgtgatt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34805857 aactaaattagtagaagctacaaagaggcaagatgttagagcctttcaatcttgtccttatctttctctttactttgcaattcaaggtattgctgtgatt 34805758  T
Q  423 agtgtgttggagtctttggagcacttctacaatctcttccacaagcaaaattatcaaagctagacaaatgg 493  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  34805757 agtgtgttggagcctttggagcacttctacaatcttttccacaag-aaaattatcaaagctagacaaatgg 34805688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 13761799 - 13761749
Alignment:
Q  17 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccct 66  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13761799 ttataagctataagctataagctcatttagtgggcttaccaaacagaccct 13761749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 24019894 - 24019844
Alignment:
Q  18 tataagctataagctataagctcatttagt-ggcttaccaaacagaccctt 67  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  24019894 tataagttataagctataagctcatttagtgggcttaccaaacagaccctt 24019844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 41877749 - 41877699
Alignment:
Q  17 ttataagctataagctataagctcatttagtgg-cttaccaaacagaccct 66  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  41877749 ttataagctataagctataagctcatttagtggacttaccaaacataccct 41877699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 23357113 - 23357160
Alignment:
Q  24 ctataagctataagctcatttagtgg-cttaccaaacagacccttaat 70  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  23357113 ctataagctataagctcatttaatgggcttaccaaacagacccttaat 23357160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 10393156 - 10393201
Alignment:
Q  17 ttataagctataagctataagctcattta-gtggcttaccaaacag 61  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  10393156 ttataagctataagctataagctaatttaggtgtcttaccaaacag 10393201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 39677398 - 39677348
Alignment:
Q  17 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccct 66  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39677398 ttataagctataagctataagctcatttagtgggcttaccaaacagaccct 39677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 29189850 - 29189899
Alignment:
Q  17 ttataagctataagctataagctcatttagtg-gcttaccaaacagaccc 65  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29189850 ttataagctataagctataagctcatttagtgagcttaccaaacagaccc 29189899  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 2855104 - 2855062
Alignment:
Q  25 tataagctataagctcatttagtg-gcttaccaaacagaccct 66  Q
    |||||| ||||||||||||||||| ||||||||||||||||||    
T  2855104 tataagttataagctcatttagtgtgcttaccaaacagaccct 2855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 3511240 - 3511191
Alignment:
Q  17 ttataagctataagctataagctcattta-gtggcttaccaaacagaccc 65  Q
    ||||||||||||||||||||| ||||| | ||| ||||||||||||||||    
T  3511240 ttataagctataagctataagttcattgaggtgtcttaccaaacagaccc 3511191  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 22756569 - 22756520
Alignment:
Q  18 tataagctataagctataagctcatttagt-ggcttaccaaacagaccct 66  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22756569 tataagctataaactataagctcatttagtgggcttaccaaacagaccct 22756520  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 3832407 - 3832448
Alignment:
Q  25 tataagctataagctcatttagtg-gcttaccaaacagaccc 65  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  3832407 tataagctataagctcatttagtgagcttaccaaacataccc 3832448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 11015612 - 11015563
Alignment:
Q  17 ttataagctataagctataagctcattta-gtggcttaccaaacagaccc 65  Q
    ||||||||||||||||||||||||||| |  || ||||||||||||||||    
T  11015612 ttataagctataagctataagctcattgacatgtcttaccaaacagaccc 11015563  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 23648215 - 23648174
Alignment:
Q  25 tataagctataagctcatttagt-ggcttaccaaacagaccc 65  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  23648215 tataagctataagctcatttaatgggcttaccaaacagaccc 23648174  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 16474793 - 16474746
Alignment:
Q  17 ttataagctataagctataagctcatttagt-ggcttaccaaacagac 63  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||    
T  16474793 ttataagctataagctataagctcatttaatgggcttaccaaacagac 16474746  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 11063023 - 11063068
Alignment:
Q  17 ttataagctataagctataagctcatttag-tggcttaccaaacag 61  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||    
T  11063023 ttataagctataagctataagctaatttagatgtcttaccaaacag 11063068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 648552 - 648508
Alignment:
Q  25 tataagctataagctcatttag-tggcttaccaaacagaccctta 68  Q
    ||||||||||||||||||| || || |||||||||||||||||||    
T  648552 tataagctataagctcattgaggtgtcttaccaaacagaccctta 648508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 21633949 - 21633996
Alignment:
Q  18 tataagctataagctataagctcatttagt-ggcttaccaaacagacc 64  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  21633949 tataagctataagctataaactcatttagtaggcttaccaaacagacc 21633996  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 36196885 - 36196837
Alignment:
Q  18 tataagctataagctataagctcatttagt-ggcttaccaaacagaccc 65  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  36196885 tataagctataaactataagctcatttaatgggcttaccaaacagaccc 36196837  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 6902249 - 6902291
Alignment:
Q  25 tataagctataagctcatttagt-ggcttaccaaacagaccct 66  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  6902249 tataagctataagctcatttagtgggcttgccaaacagaccct 6902291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 20511427 - 20511382
Alignment:
Q  25 tataagctataagctcatttagtg-gcttaccaaacagacccttaa 69  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||    
T  20511427 tataagctataagctcatttagggaccttaccaaacagacccttaa 20511382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 35190741 - 35190790
Alignment:
Q  17 ttataagctataagctataagctcatttagtggcttaccaaacagaccct 66  Q
    |||||||||||||||||||||||| ||| | |  ||||||||||||||||    
T  35190741 ttataagctataagctataagctctttttgggagttaccaaacagaccct 35190790  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 41864207 - 41864248
Alignment:
Q  25 tataagctataagctcatttagtg-gcttaccaaacagaccc 65  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  41864207 tataagttataagctcatttagtgagcttaccaaacagaccc 41864248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 30623376 - 30623416
Alignment:
Q  26 ataagctataagctcatttagt-ggcttaccaaacagaccc 65  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  30623376 ataagttataagctcatttagtgggcttaccaaacagaccc 30623416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 28429059 - 28429016
Alignment:
Q  25 tataagctataagctcatttagt-ggcttaccaaacagaccctt 67  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  28429059 tataagctataagctcatttagtgggcttaccaaacagaccctt 28429016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 7781273 - 7781323
Alignment:
Q  17 ttataagctataagctataagctcatttagtggc-ttaccaaacagaccct 66  Q
    |||||||||||||||||||||||| |||  |||| ||||||||||||||||    
T  7781273 ttataagctataagctataagctcgtttgatggctttaccaaacagaccct 7781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 9252 - 9202
Alignment:
Q  17 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccct 66  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  9252 ttataaggtataagctataagctcatttagtgggcttaccaaaaagaccct 9202  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 23029812 - 23029758
Alignment:
Q  17 ttataagctataagctataagctcatt-tagtggcttaccaaacagacccttaat 70  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||    
T  23029812 ttataagctataagctataagctcattgtggtgtcttaccaaacagacccataat 23029758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 19757511 - 19757539
Alignment:
Q  13 aatattataagctataagctataagctca 41  Q
    |||||||||||||||||||||||||||||    
T  19757511 aatattataagctataagctataagctca 19757539  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 31558327 - 31558377
Alignment:
Q  17 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccct 66  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  31558327 ttataagctataagctcaaagctcatttagtgggcttaccaaacagaccct 31558377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 2187325 - 2187374
Alignment:
Q  17 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccc 65  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  2187325 ttataggctataagctaaaagctcatttagtgggcttaccaaacagaccc 2187374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 5505874 - 5505805
Alignment:
Q  17 ttataagctataagctataagctcatt-tagtggcttaccaaacagacccttaattccaaaactttcaat 85  Q
    |||||||||||||||||||||||||||  |  ||||||||||||||||||||| || | ||| |||||||    
T  5505874 ttataagctataagctataagctcattagatgggcttaccaaacagacccttagtttcgaaagtttcaat 5505805  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 44947330 - 44947382
Alignment:
Q  17 ttataagctataagctataagctcatttagtggc-ttaccaaacagaccctta 68  Q
    |||||||||||||||||||||||| |||  |||| ||||||||||||||||||    
T  44947330 ttataagctataagctataagctcgtttgatggctttaccaaacagaccctta 44947382  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 193420 - 193370
Alignment:
Q  17 ttataagctataagctataagctcatt-tagtggcttaccaaacagaccct 66  Q
    |||||||||||||||||||||||||||  |  |||||||||||||||||||    
T  193420 ttataagctataagctataagctcattagatgggcttaccaaacagaccct 193370  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 37713271 - 37713315
Alignment:
Q  25 tataagctataagctcatttagtg-gcttaccaaacagaccctta 68  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||    
T  37713271 tataagccataagctcatttagtgagcttaccaaagagaccctta 37713315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 39719305 - 39719349
Alignment:
Q  17 ttataagctataagctataagctcatttagtg-gcttaccaaaca 60  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||    
T  39719305 ttataagctataagctataagcttatttagtgagcttacaaaaca 39719349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 192035 - 191986
Alignment:
Q  17 ttataagctataagctataagctcattta-gtggcttaccaaacagaccc 65  Q
    ||||||||||||||||||||||||||| |  || ||||||||||||||||    
T  192035 ttataagctataagctataagctcattgacatgtcttaccaaacagaccc 191986  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 84277 - 84225
Alignment:
Q  17 ttataagctataagctataagctcatttagtgg-cttaccaaacagaccctta 68  Q
    ||||| ||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  84277 ttatatgctataagctataagctcattttatggacttacccaacagaccctta 84225  T

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