View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_22 (Length: 281)
Name: NF15042_low_22
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 1139481 - 1139229
Alignment:
| Q |
13 |
aaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139481 |
aaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataatt |
1139382 |
T |
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| Q |
113 |
catcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1139381 |
catcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccatttgaagtaaggttatgagtaatagccgaacaattttgtttgat |
1139282 |
T |
|
| Q |
213 |
agaaatattggtttggttattttggtcatatgatgtttttgagatgttggata |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139281 |
agaaatattggtttggttattttggtcatatgatgtttttgagatgttggata |
1139229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 1136270 - 1136021
Alignment:
| Q |
13 |
aaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataatt |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136270 |
aaaacaggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataatt |
1136171 |
T |
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| Q |
113 |
catcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgat |
212 |
Q |
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| T |
1136170 |
catcctcgttcatgtcatgcatagccttaggaatctttaataattcttccaaaccatttgaagtaaggttatgag---tagccggacaattttgtttgat |
1136074 |
T |
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| Q |
213 |
agaaatattggtttggttattttggtcatatgatgtttttgagatgttggata |
265 |
Q |
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| T |
1136073 |
agaaatattggtttggttatcatggtcatatgatgtttttgagatgttggata |
1136021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 54479256 - 54479475
Alignment:
| Q |
13 |
aaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataatt |
112 |
Q |
| |
|
|||| ||||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
54479256 |
aaaacaggacctattgtcaagaacataaacgcaacctttggtgtttgtttgaatggagttttatgaatcataggttccaatgaagctctccaaaacaatt |
54479355 |
T |
|
| Q |
113 |
catcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgat |
212 |
Q |
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|||||||||||||||||||||||||| |||||||||| || || |||| ||| |||| | |||||||||||| ||||| | || | |||| || |||||| |
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| T |
54479356 |
catcctcattcatgtcatgcatagccataggaatcttcaacaagtctttcaacccatgtgaagtaaggttattagtaacaaccaagcaatattttttgat |
54479455 |
T |
|
| Q |
213 |
agaaatattggtttggttat |
232 |
Q |
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||||||||| |||||||||| |
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| T |
54479456 |
agaaatatttgtttggttat |
54479475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 31269134 - 31269290
Alignment:
| Q |
22 |
ccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcat |
121 |
Q |
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||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||||||||||||||||| || |||| |
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| T |
31269134 |
cctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaagctctccaaaataattcctcttcat |
31269233 |
T |
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| Q |
122 |
tcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaa |
178 |
Q |
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|||| |||||||||||| | |||||||| || ||||| ||||| |||||| |||||| |
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| T |
31269234 |
tcatatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaa |
31269290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 48324469 - 48324581
Alignment:
| Q |
19 |
ggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcct |
118 |
Q |
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|||||||||||||| ||||| || |||| |||||||||||| || || |||| || |||||||||| | ||| |||| ||| | ||| |||||||| | |
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| T |
48324469 |
ggaccttttgtcaaaaacataaaggcaatctttggtgtttgattgaacggaggttcgtgaatcatagaaatcaacgaagttcttcgaaacaattcatcat |
48324568 |
T |
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| Q |
119 |
cattcatgtcatg |
131 |
Q |
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| T |
48324569 |
cgttcatatcatg |
48324581 |
T |
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