View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15042_low_24 (Length: 278)

Name: NF15042_low_24
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15042_low_24
NF15042_low_24
[»] chr6 (11 HSPs)
chr6 (37-104)||(27587796-27587863)
chr6 (107-154)||(27587905-27587952)
chr6 (37-101)||(25487985-25488049)
chr6 (37-101)||(26061233-26061297)
chr6 (37-101)||(26081203-26081267)
chr6 (107-154)||(25487868-25487915)
chr6 (107-154)||(27312877-27312924)
chr6 (37-90)||(27659669-27659722)
chr6 (106-154)||(26634381-26634429)
chr6 (106-154)||(26740357-26740405)
chr6 (39-91)||(27599637-27599689)
[»] chr2 (1 HSPs)
chr2 (107-154)||(17989397-17989444)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 27587796 - 27587863
Alignment:
Q  37 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagagcac 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  27587796 aatatctgcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagagcac 27587863  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 27587905 - 27587952
Alignment:
Q  107 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 154  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  27587905 aaggatcttataaatgtcggttgtcagattcagttctttatcccacat 27587952  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 25488049 - 25487985
Alignment:
Q  37 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 101  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
T  25488049 aatatttgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 25487985  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 26061297 - 26061233
Alignment:
Q  37 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 101  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
T  26061297 aatatatgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 26061233  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 26081267 - 26081203
Alignment:
Q  37 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 101  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
T  26081267 aatatatgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 26081203  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 25487915 - 25487868
Alignment:
Q  107 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 154  Q
    |||||||| || |||||||||||||||||| | |||||||||||||||    
T  25487915 aaggatctcatgaatgtcggttctcagatttatttctttatcccacat 25487868  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 27312877 - 27312924
Alignment:
Q  107 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 154  Q
    |||||||| ||||||||||||||| ||||| ||||||||||| |||||    
T  27312877 aaggatctcataaatgtcggttcttagatttagttctttatcacacat 27312924  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 27659669 - 27659722
Alignment:
Q  37 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatat 90  Q
    |||||||| |||| |||||||||||  |||| ||||||||| ||||||||||||    
T  27659669 aatatctgtagcacaaacatcctccttaaaaacttacatcatgtctcaccatat 27659722  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 26634429 - 26634381
Alignment:
Q  106 gaaggatctgataaatgtcggttctcagattcagttctttatcccacat 154  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||| |||||    
T  26634429 gaaggatttcataaatgtcggttcttagatttagttctttatcacacat 26634381  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 26740405 - 26740357
Alignment:
Q  106 gaaggatctgataaatgtcggttctcagattcagttctttatcccacat 154  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||| |||||    
T  26740405 gaaggatttcataaatgtcggttcttagatttagttctttatcacacat 26740357  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 27599637 - 27599689
Alignment:
Q  39 tatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatc 91  Q
    ||||||||||| || ||||||||  |||| |||||||||||| ||||||||||    
T  27599637 tatctgcagcacaagcatcctccctaaaaacttacatcaggtatcaccatatc 27599689  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 17989397 - 17989444
Alignment:
Q  107 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 154  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  17989397 aaggatcggataaatgttggttctcagattcagttctttatcccacat 17989444  T

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