View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_25 (Length: 262)
Name: NF15042_low_25
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 46748621 - 46748861
Alignment:
| Q |
1 |
ttgtgcaaacttttgaatgatagtaacaaaacctgataaggataagagtgtagcagcagatnnnnnnnnnngaagaattcctgaacaaattggtggcatt |
100 |
Q |
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| T |
46748621 |
ttgtgcaaacttttgaatgatagtaacaaaacctgataaggataagagtgtagcagcagataaaaaaaa---atgaattcttgaacaaattggtggcatt |
46748717 |
T |
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| Q |
101 |
taaaatgagaagttggagacaattttttataaagcctcataatatcagagtcatacatatcacaaaaatgtcacatgcactatcgcataaaagggtttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46748718 |
taaaatgagaagttggagacaattttttataaagcctcataatatcagagtcatacatatcacaaaaatgtcacatgcactatcacataaaagggtttgc |
46748817 |
T |
|
| Q |
201 |
acctgtctagtagcaagaaaaaccaaaagttaccatctcggttg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46748818 |
acctgtctagtagcaagaaaaaccaaaagttaccatctcggttg |
46748861 |
T |
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