View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15042_low_3 (Length: 542)

Name: NF15042_low_3
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15042_low_3
NF15042_low_3
[»] chr1 (29 HSPs)
chr1 (331-523)||(49623081-49623268)
chr1 (125-301)||(49622841-49623016)
chr1 (125-299)||(15544441-15544615)
chr1 (127-298)||(46833179-46833352)
chr1 (125-306)||(29743408-29743599)
chr1 (125-306)||(11376619-11376810)
chr1 (125-328)||(42886646-42886864)
chr1 (125-306)||(51621791-51621972)
chr1 (125-306)||(44565005-44565196)
chr1 (125-252)||(261672-261798)
chr1 (125-306)||(2326768-2326959)
chr1 (11-65)||(49622727-49622781)
chr1 (11-65)||(261558-261612)
chr1 (11-65)||(2326655-2326709)
chr1 (11-65)||(15544675-15544729)
chr1 (11-65)||(44565256-44565310)
chr1 (11-65)||(51621678-51621732)
chr1 (243-306)||(21374002-21374065)
chr1 (11-65)||(11376870-11376924)
chr1 (11-64)||(29743658-29743711)
chr1 (11-65)||(46833445-46833499)
chr1 (125-212)||(37661901-37661989)
chr1 (125-240)||(33505744-33505859)
chr1 (14-57)||(42886921-42886964)
chr1 (331-490)||(49602734-49602892)
chr1 (125-178)||(15429337-15429390)
chr1 (294-328)||(11376582-11376616)
chr1 (294-328)||(21374068-21374102)
chr1 (284-328)||(25700306-25700350)
[»] chr2 (17 HSPs)
chr2 (125-306)||(35734525-35734706)
chr2 (125-306)||(10355624-10355805)
chr2 (125-306)||(16254926-16255107)
chr2 (125-302)||(28808682-28808864)
chr2 (125-328)||(7759303-7759522)
chr2 (125-328)||(34210347-34210560)
chr2 (127-299)||(16256139-16256321)
chr2 (125-306)||(43589809-43590000)
chr2 (11-65)||(10355864-10355918)
chr2 (11-65)||(16255167-16255221)
chr2 (11-65)||(35734411-35734465)
chr2 (11-65)||(28808923-28808977)
chr2 (11-57)||(7759071-7759117)
chr2 (15-57)||(7759119-7759161)
chr2 (14-57)||(7759202-7759245)
chr2 (25-64)||(16256384-16256423)
chr2 (141-212)||(35851671-35851742)
[»] chr6 (8 HSPs)
chr6 (125-309)||(18227319-18227503)
chr6 (127-238)||(20219057-20219168)
chr6 (127-238)||(22113082-22113193)
chr6 (125-306)||(11455106-11455297)
chr6 (11-57)||(20219243-20219289)
chr6 (11-57)||(22113268-22113314)
chr6 (189-289)||(17508420-17508520)
chr6 (22-65)||(18227562-18227605)
[»] scaffold0470 (1 HSPs)
scaffold0470 (125-306)||(60-251)
[»] chr8 (14 HSPs)
chr8 (125-306)||(6610772-6610963)
chr8 (125-248)||(43633687-43633808)
chr8 (127-306)||(2955918-2956107)
chr8 (127-252)||(36557098-36557223)
chr8 (128-306)||(40977542-40977725)
chr8 (246-330)||(22976388-22976472)
chr8 (125-252)||(21595150-21595277)
chr8 (11-64)||(6610658-6610711)
chr8 (14-65)||(43633868-43633919)
chr8 (246-306)||(43047901-43047961)
chr8 (125-224)||(43047984-43048083)
chr8 (125-211)||(22976474-22976560)
chr8 (288-328)||(36557047-36557087)
chr8 (24-56)||(27424325-27424357)
[»] chr7 (10 HSPs)
chr7 (125-297)||(29008622-29008804)
chr7 (125-306)||(12313887-12314068)
chr7 (125-306)||(1827889-1828080)
chr7 (127-306)||(47645423-47645612)
chr7 (125-302)||(33118636-33118828)
chr7 (126-328)||(44119040-44119256)
chr7 (11-61)||(29008509-29008559)
chr7 (244-299)||(40461283-40461338)
chr7 (11-57)||(42027803-42027849)
chr7 (21-57)||(40040517-40040553)
[»] chr4 (26 HSPs)
chr4 (125-299)||(38024524-38024708)
chr4 (125-328)||(6885015-6885234)
chr4 (125-297)||(29118913-29119085)
chr4 (125-252)||(37563788-37563915)
chr4 (125-306)||(49284074-49284259)
chr4 (125-290)||(55873512-55873687)
chr4 (125-252)||(29191025-29191151)
chr4 (234-325)||(54975749-54975840)
chr4 (125-201)||(54975830-54975906)
chr4 (127-306)||(42739582-42739771)
chr4 (125-306)||(1921145-1921336)
chr4 (125-306)||(22443731-22443922)
chr4 (127-250)||(47497566-47497690)
chr4 (11-65)||(29191204-29191258)
chr4 (11-65)||(54975965-54976019)
chr4 (125-240)||(41279202-41279317)
chr4 (14-65)||(38024414-38024465)
chr4 (139-207)||(8067199-8067268)
chr4 (127-294)||(39593207-39593379)
chr4 (11-57)||(6884912-6884958)
chr4 (11-65)||(37563973-37564027)
chr4 (243-306)||(30548051-30548114)
chr4 (11-57)||(55873758-55873804)
chr4 (294-328)||(22443925-22443959)
chr4 (294-328)||(38024718-38024752)
chr4 (294-328)||(42739774-42739808)
[»] chr5 (11 HSPs)
chr5 (131-298)||(30411399-30411577)
chr5 (125-291)||(35384171-35384347)
chr5 (125-306)||(1751295-1751486)
chr5 (133-306)||(11726579-11726762)
chr5 (125-306)||(10329701-10329894)
chr5 (125-306)||(37275944-37276135)
chr5 (11-65)||(35384406-35384460)
chr5 (11-65)||(30411279-30411333)
chr5 (125-212)||(37275249-37275336)
chr5 (243-306)||(37275334-37275397)
chr5 (288-326)||(25595631-25595669)
[»] scaffold0155 (1 HSPs)
scaffold0155 (127-304)||(27987-28174)
[»] chr3 (3 HSPs)
chr3 (125-306)||(46485484-46485675)
chr3 (141-242)||(7311392-7311490)
chr3 (294-328)||(46485678-46485712)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 8e-81; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 331 - 523
Target Start/End: Original strand, 49623081 - 49623268
Alignment:
Q  331 atggttggatgagtccatttgtttcaagatcacacctttcaaacttgaaacaataatatattgaacccccgccatactacagtactactaccatctataa 430  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||     |||||||||||||||    
T  49623081 atggttggatgagtccatttgtttcaagagcacacctttcaaacttgaaacaataatatattgaaaccccgccatactac-----tactaccatctataa 49623175  T
Q  431 tgtttcaaacattctcctatcacggcgtaaatatcacatatactctacccaacaaggtttccgaacaaccaaaactatgtaaattaaagccta 523  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  49623176 tgtttcaagcattctcctatcacggcgtaaatatcacatatactctacccaactaggtttccgaacaaccaaaattatgtaaattaaagccta 49623268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 49622841 - 49623016
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  49622841 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaataatttggttttaaaatccctctc-ttcccttataaaccaaaca 49622939  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcc 301  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  49622940 catatttaattaaaatttcttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctcc 49623016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 125 - 299
Target Start/End: Complemental strand, 15544615 - 15544441
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| || ||||||    
T  15544615 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctcccctccccttatgaaccaaaca 15544516  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 299  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  15544515 catatttaattaaaatcccttccctcccatcatttgaaccaaacatgtatttaattgatatatctccccttccct 15544441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 127 - 298
Target Start/End: Complemental strand, 46833352 - 46833179
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaa--gtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| || ||| ||||||| || ||||||    
T  46833352 aagtgaataatagaaaaatcatgatattgttttaaggttagagggataaaaaaaagtaatttggttttaaaatccttcccctccccttatgaaccaaaca 46833253  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccc 298  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46833252 catatttaattaaaatcccttccctcccatcatttgaaccaaatatatatttaattgatatatctccccttccc 46833179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 29743599 - 29743408
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  29743599 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 29743500  T
Q  225 catatttgattaaaatctcttcc----------ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| ||||||||| |||||          ||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  29743499 catatttaattaaaatcccttcccttcccttctctcccatcatttgaaccaaacatatatttaattgatatatctccccttccattccctcc 29743408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 11376810 - 11376619
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  11376810 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 11376711  T
Q  225 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| ||||||||||||||||||          |||||||||||| |||| |||||||||||||||||||||||| || ||||||||||    
T  11376710 catatttaattaaaatctcttccctcccattccctcccatcatttgaaccaaacatatatttaattgatatatctcccttttcctcccctcc 11376619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 125 - 328
Target Start/End: Complemental strand, 42886864 - 42886646
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  42886864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 42886765  T
Q  225 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctc-----cccttccctcccctccatt 309  Q
    ||||||| ||||||||          | ||||||| |||||||||||| |||| ||||||||||||||||||||||     ||||||||| |||||||||    
T  42886764 catatttaattaaaatcccttccatccccttcccttccatcatttgaaccaaacatatatttaattgatatatctccccttcccttcccttccctccatt 42886665  T
Q  310 aaaaccactcccctcccct 328  Q
    |||||| ||||||||||||    
T  42886664 aaaacccctcccctcccct 42886646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 51621791 - 51621972
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||||| ||| |||  |||||| || ||||||    
T  51621791 tgaagtgaataatataaaaatcatgatattgttttaagattacagtgataaaaaagtaatttggttttaaaatctctcccctctccttatgaaccaaaca 51621890  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| |||||||||  || |||||||||||||||| |||| |||||| ||||||||||||||| |||||||| ||||||    
T  51621891 catatttaattaaaatccatttcctcccatcatttgaaccaaacatatatctaattgatatatctctccttcccttccctcc 51621972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 44565196 - 44565005
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||||| || ||||||    
T  44565196 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttgattttaaaatccctcccctccccttatgaaccaaaca 44565097  T
Q  225 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| ||| ||||||          ||||| |||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||    
T  44565096 catatttaattgaaatctctttcctccccttccttcccatcatttgaaccaaacatgtatttaattgatatatctccccttcccttccctcc 44565005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 261672 - 261798
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  261672 tgaagtgaataatataaaaatcatgatattgttttaaggttagagg-ataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 261770  T
Q  225 catatttgattaaaatctcttccctccc 252  Q
    ||||||| ||||||||||||||||||||    
T  261771 catatttaattaaaatctcttccctccc 261798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 2326768 - 2326959
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||| ||| ||| || |||| |    
T  2326768 tgaagtgaataatataaaaatcataatattgttttaaggttagaggggtaaaaaggtaatttggttttaaaatccctcccctccccgtatgaaccaaata 2326867  T
Q  225 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||| |||||||||||||||||||||| | ||||||    
T  2326868 catatttaattaaaataccttcactccccttccctcccatcatttgaaccaaacatatatataattgatatatctccccttccattccctcc 2326959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 49622727 - 49622781
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622727 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 49622781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 261558 - 261612
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  261558 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 261612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 2326655 - 2326709
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2326655 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 2326709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 15544729 - 15544675
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15544729 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 15544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 44565310 - 44565256
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44565310 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 44565256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 51621678 - 51621732
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51621678 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 51621732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 21374002 - 21374065
Alignment:
Q  243 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  21374002 cttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 21374065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 11376924 - 11376870
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  11376924 tagattattttagaagtgctttaatatttatgaatacctaatattttgttagaac 11376870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 29743711 - 29743658
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaa 64  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  29743711 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaa 29743658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 46833499 - 46833445
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  46833499 tagattattttagaattgttctaatatttatgaatacctaatattttgttagaac 46833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 37661901 - 37661989
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttccctt 212  Q
    ||||||||||||| |||||||| ||||| | ||||||  |||||||||  ||||||||||||| ||||||||||||||| ||| |||||    
T  37661901 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaagtaatttagttttaaaatccctcccctcccctt 37661989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 33505859 - 33505744
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  33505859 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 33505760  T
Q  225 catatttgattaaaat 240  Q
     |||||| ||| ||||    
T  33505759 tatatttaattgaaat 33505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 42886964 - 42886921
Alignment:
Q  14 attattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  42886964 attattttagaagtgctctaatatttatgaatacctaatatttt 42886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 490
Target Start/End: Original strand, 49602734 - 49602892
Alignment:
Q  331 atggttggatgagtccatttgtttcaagatcacacctttcaaacttgaaacaataatatattgaacccccgccatactacagtacta-cta-ccatctat 428  Q
    ||||||||||||||||||||||||||| | ||   |||||||||| ||||| | | |||||||||||||| ||||||  || ||| | |||   ||||||    
T  49602734 atggttggatgagtccatttgtttcaatagcaacactttcaaactggaaactagactatattgaacccccaccatac--cactaccatctatttatctat 49602831  T
Q  429 aatgtttcaaacattctcctatcacggcgtaaatatcacatatactctacccaacaaggttt 490  Q
    | |||||||| ||||| || || ||||| ||||||| | |||||||||| ||||||||||||    
T  49602832 attgtttcaagcattcaccaattacggcataaatattaaatatactcta-ccaacaaggttt 49602892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 15429390 - 15429337
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaa 178  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||||||| |||||    
T  15429390 tgaagtgaataattttaaaatcatgagattgttttaagattagagggataaaaa 15429337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 11376616 - 11376582
Alignment:
Q  294 ttccctcccctccattaaaaccactcccctcccct 328  Q
    |||||||||||||||||||||| ||||||||||||    
T  11376616 ttccctcccctccattaaaacccctcccctcccct 11376582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 21374068 - 21374102
Alignment:
Q  294 ttccctcccctccattaaaaccactcccctcccct 328  Q
    |||||||||||||||||||||| ||||||||||||    
T  21374068 ttccctcccctccattaaaacccctcccctcccct 21374102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 25700306 - 25700350
Alignment:
Q  284 atatctccccttccctcccctccattaaaaccactcccctcccct 328  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||    
T  25700306 atatctcccctcccctcccctccgttaaaatccctcccctcccct 25700350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 5e-79; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 35734525 - 35734706
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  35734525 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 35734624  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  35734625 catatttaattaaaatcccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctcccctcc 35734706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 10355805 - 10355624
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  10355805 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 10355706  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||    
T  10355705 catatttaattaaaatctcttccctcccatcatttgaaccaaacatatatttaattgatatatttccccttcccttccctcc 10355624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 16255107 - 16254926
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  16255107 tgaagtgaataatataaagatcttgatattgtttcaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 16255008  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| ||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  16255007 catatttaattaaaatcccttccctcccattatttgaaccaaacatatatttaattgatatatcttcccttccctcccctcc 16254926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 125 - 302
Target Start/End: Complemental strand, 28808864 - 28808682
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||     ||| || |    
T  28808864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctcccctccccttatgaacc 28808765  T
Q  220 aaacacatatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctccc 302  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28808764 aaacacatatttaattaaaatatcttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctccc 28808682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 125 - 328
Target Start/End: Original strand, 7759303 - 7759522
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaag-taatttggttttaaaatccctctccttcccttataaatcaaac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||| ||| ||| ||||||| || |||||    
T  7759303 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaaataatttggttttaaaatctctcccctccccttatgaaccaaac 7759402  T
Q  224 acatatttgattaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctcccc-----ttccctcccctccat 308  Q
    |||||||| |||||||||||          ||||||||||||||||||| |||| |||||||||||||||||||||||||     |||||||||||||||    
T  7759403 acatatttaattaaaatctcttccctcccattccctcccatcatttgaaccaaacatatatttaattgatatatctccccttcctttccctcccctccat 7759502  T
Q  309 taaaaccactcccctcccct 328  Q
    ||||||| ||||||||||||    
T  7759503 taaaacccctcccctcccct 7759522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 125 - 328
Target Start/End: Original strand, 34210347 - 34210560
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  34210347 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 34210446  T
Q  225 catatttgattaaaatctcttccctccc----------atcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaac 314  Q
     |||||||||||||||| || |||||||          |||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  34210447 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttccctcccctccattaaaac 34210546  T
Q  315 cactcccctcccct 328  Q
      ||||||||||||    
T  34210547 tcctcccctcccct 34210560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 127 - 299
Target Start/End: Complemental strand, 16256321 - 16256139
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 226  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | ||||||||| |    
T  16256321 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaatcaaacata 16256222  T
Q  227 tatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 299  Q
    ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||    
T  16256221 tatttgattaaaatccctcccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttccct 16256139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 43589809 - 43590000
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||  ||||| ||||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || ||||||    
T  43589809 tgaagtgaataatttaaaaattgtgatactgttttaatattagagggataaaaaagtaatttagttttaaaatctctgccctccccttgtgaaccaaaca 43589908  T
Q  225 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
      ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||    
T  43589909 tgtatttgattaaaattcctcccctccccttccctcccatcatttgaaccaaacatatatttaattaaaatatctccccttcccttccctcc 43590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 10355918 - 10355864
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10355918 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 10355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 16255221 - 16255167
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16255221 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 16255167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 35734411 - 35734465
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35734411 tagattattttagaagtgctctaatatttatgaatacctaatattttgttagaac 35734465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 28808977 - 28808923
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  28808977 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaac 28808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 7759071 - 7759117
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7759071 tagattattttagaagtgctctaatatttatgaatacctaatatttt 7759117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 7759119 - 7759161
Alignment:
Q  15 ttattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  7759119 ttattttagaagtgctctaatatttatgaatacctaatatttt 7759161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 7759202 - 7759245
Alignment:
Q  14 attattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  7759202 attattttagaagtgctctgatatttatgaatacctaatatttt 7759245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 16256423 - 16256384
Alignment:
Q  25 agtgctctaatatttatgaatacctaatattttgttagaa 64  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  16256423 agtgctctaatatttatgaatacccaatatcttgttagaa 16256384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 35851742 - 35851671
Alignment:
Q  141 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 212  Q
    |||||||||| ||||||||||  |||||| || |||||||||||||||| || |||||| |  |||||||||    
T  35851742 aaaatcatgagattgttttaatattagagcgataaaaaagtaatttggtgttgaaatcctttcccttccctt 35851671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 125 - 309
Target Start/End: Complemental strand, 18227503 - 18227319
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  18227503 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 18227404  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccatt 309  Q
    ||||||| ||||||||| | |||||||||||||||||| |||| |||||||||||||||||| ||||| ||| || |||||||||    
T  18227403 catatttaattaaaatcccgtccctcccatcatttgaaccaaacatatatttaattgatatacctcccattctcttccctccatt 18227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 20219168 - 20219057
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 226  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  20219168 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 20219069  T
Q  227 tatttgattaaa 238  Q
    ||||| ||||||    
T  20219068 tatttaattaaa 20219057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 22113193 - 22113082
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 226  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  22113193 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 22113094  T
Q  227 tatttgattaaa 238  Q
    ||||| ||||||    
T  22113093 tatttaattaaa 22113082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 11455297 - 11455106
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| ||||||||  |||| | ||||||  ||||||| | ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  11455297 tgaagtgaataatttaaaaatc--gatactattttaatattagagg-ataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 11455201  T
Q  225 catatttgattaaaat-------------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
     ||||||||||||| |             | ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  11455200 tatatttgattaaattaatccctcccgtccccttccctcctatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 11455106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 20219289 - 20219243
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  20219289 tagattattttagaagtgctctaatatttatgaatacctaatatttt 20219243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 22113314 - 22113268
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22113314 tagattattttagaagtgctctaatatttatgaatacctaatatttt 22113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 17508520 - 17508420
Alignment:
Q  189 ttttaaaatccctctccttcccttataaatcaaacacatatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatc 288  Q
    ||||||||||||||   || |||| | |||||||||||| ||| |||| ||||||| ||||||| || |||||| |||| |||||||||||| | |||||    
T  17508520 ttttaaaatccctcaattttccttgtgaatcaaacacatttttaattagaatctctcccctcccctcttttgaaccaaacatatatttaattcaaatatc 17508421  T
Q  289 t 289  Q
    |    
T  17508420 t 17508420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 18227605 - 18227562
Alignment:
Q  22 agaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  18227605 agaagtgctctaatatttatgaatacctaatattatgtgagaac 18227562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 60 - 251
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  60 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 159  T
Q  225 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  160 catatttaattaaaatcccttccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccctttcccttccctcc 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 6610772 - 6610963
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  6610772 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 6610871  T
Q  225 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  6610872 catatttaattaaaatcccttccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccctttcccttccctcc 6610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 43633808 - 43633687
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  43633808 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 43633709  T
Q  225 catatttgattaaaatctcttccc 248  Q
    |  |||| ||||||||| ||||||    
T  43633708 c--atttaattaaaatcccttccc 43633687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 127 - 306
Target Start/End: Complemental strand, 2956107 - 2955918
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 226  Q
    ||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || |||||| |    
T  2956107 aagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctaccctccccttgtgaaccaaacata 2956008  T
Q  227 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  2956007 tatttgattaaaatctctccccttcccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 2955918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 127 - 252
Target Start/End: Complemental strand, 36557223 - 36557098
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 226  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| |||| |||||| |    
T  36557223 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtaaaccaaacata 36557124  T
Q  227 tatttgattaaaatctcttccctccc 252  Q
    ||||||||||||||| || |||||||    
T  36557123 tatttgattaaaatccctcccctccc 36557098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 128 - 306
Target Start/End: Complemental strand, 40977725 - 40977542
Alignment:
Q  128 agtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacat 227  Q
    |||||||||| |||||||  ||||| | ||||||  ||| ||||| |||| |||||||| ||||||||||||||| ||| ||||  | || |||||| ||    
T  40977725 agtgaataatttaaaaattgtgatactattttaatattatagggacaaaacagtaatttagttttaaaatccctcccctcccctcgtgaaccaaacatat 40977626  T
Q  228 atttgattaaaatctcttccctc-----ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    |||||||||||||| || |||||     |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  40977625 atttgattaaaatccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 40977542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 22976472 - 22976388
Alignment:
Q  246 ccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcccctag 330  Q
    |||| |||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  22976472 cccttccatcatttgaaccaaacatatatttaattgaaatatctccctttccctcccctccattaaaacccctcccctcccctag 22976388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 21595150 - 21595277
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||||  |||||| ||||| | || ||||||    
T  21595150 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctttctcctccccttctgaaccaaaca 21595249  T
Q  225 catatttgattaaaatctcttccctccc 252  Q
     |||||||||||||||| || |||||||    
T  21595250 tatatttgattaaaatccctcccctccc 21595277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 6610658 - 6610711
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaa 64  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  6610658 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaa 6610711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 43633919 - 43633868
Alignment:
Q  14 attattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  43633919 attattttaaaagtgctctaatatttatgaatacctaatattttgttagaac 43633868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 43047961 - 43047901
Alignment:
Q  246 ccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    |||||| |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  43047961 ccctcctatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 43047901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 43048083 - 43047984
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||| | ||  | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| ||||| | || ||||||    
T  43048083 tgaagtgaataatttaaaaatcgttatgctattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctccccttgtgaaccaaaca 43047984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 22976560 - 22976474
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct 211  Q
    ||||||||||||| | |||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||| ||||||| ||||||||    
T  22976560 tgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaatatccctccccttccct 22976474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 36557087 - 36557047
Alignment:
Q  288 ctccccttccctcccctccattaaaaccactcccctcccct 328  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  36557087 ctccctttccctcccctccattaaaacccctcccctcccct 36557047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 27424325 - 27424357
Alignment:
Q  24 aagtgctctaatatttatgaatacctaatattt 56  Q
    |||||||||||||||||| ||||||||||||||    
T  27424325 aagtgctctaatatttataaatacctaatattt 27424357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 125 - 297
Target Start/End: Original strand, 29008622 - 29008804
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||  || ||||||    
T  29008622 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccgtacgaaccaaaca 29008721  T
Q  225 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttcc 297  Q
    ||||||| ||||||||||          |||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  29008722 catatttaattaaaatctcttcactccccttccctcccatcatttgaatcaaacatatatttaattgatatatctccccttcc 29008804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 12313887 - 12314068
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||  ||||||||||||||| ||| ||| | | || ||||||    
T  12313887 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaattcagttttaaaatccctcccctccccctgtgaaccaaaca 12313986  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  12313987 catatttaattaaaatctcttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 12314068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 1828080 - 1827889
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1828080 tgaagtggataatttaaaaatcgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1827981  T
Q  225 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
     |||||||||||||||||          ||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  1827980 tatatttgattaaaatctctcccctccccttcccttccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 1827889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 127 - 306
Target Start/End: Complemental strand, 47645612 - 47645423
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 226  Q
    ||||||||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  47645612 aagtgaataatttaaaaatcgtgatactattttaatattaaagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 47645513  T
Q  227 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||||||||||||          |||||||| ||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  47645512 tatttgattaaaatctctcccctccccttccctctcatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 47645423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 125 - 302
Target Start/End: Complemental strand, 33118828 - 33118636
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 219  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| || |||||||||| ||||||||||||||| ||| ||||     | | || |    
T  33118828 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataataaagtaatttagttttaaaatccctcccctcccctacccttgtgaacc 33118729  T
Q  220 aaacacatatttgattaaaatctcttccctcc----------catcatttgaagcaaatatatatttaattgatatatctccccttccctccc 302  Q
    ||||| ||||||||||||||||||||||||||          ||||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  33118728 aaacatatatttgattaaaatctcttccctccccttccctctcatcatttgaaccaaacatatatttaattgaaatatctccccttccctccc 33118636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 126 - 328
Target Start/End: Original strand, 44119040 - 44119256
Alignment:
Q  126 gaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 225  Q
    |||||||||||| |||||||| ||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| | | ||||| | || ||||||     
T  44119040 gaagtgaataatttaaaaatcgtgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccatccccttctgaaccaaacat 44119139  T
Q  226 atatttgattaaaatc--------------tcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaa 311  Q
    ||||||||||||||||               | |||| ||||||||||||| |||| |||||||||||||| |||| |  |||||||| |||||||||||    
T  44119140 atatttgattaaaatccatccccttcccatccctcccacccatcatttgaaccaaacatatatttaattgaaatatttttccttcccttccctccattaa 44119239  T
Q  312 aaccactcccctcccct 328  Q
    | |  ||||||||||||    
T  44119240 acctcctcccctcccct 44119256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 29008509 - 29008559
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgtta 61  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29008509 tagattattttagaagtgctctaatatttatgaatacctaatattttgtta 29008559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 40461283 - 40461338
Alignment:
Q  244 ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 299  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  40461283 ttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttccct 40461338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 42027803 - 42027849
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  42027803 tagattattttagaagtgctctaatatttatgaatacctaatatttt 42027849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 40040553 - 40040517
Alignment:
Q  21 tagaagtgctctaatatttatgaatacctaatatttt 57  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  40040553 tagaactgctttaatatttatgaatacctaatatttt 40040517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 125 - 299
Target Start/End: Original strand, 38024524 - 38024708
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||| || |||| || ||||||    
T  38024524 tgaagtgaataatataaaaatcatgatattgttttaaggttagaaggataaaaaagtaatttggttttaaaatctctcccctccctttatgaaccaaaca 38024623  T
Q  225 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 299  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  38024624 catatttaattaaaattcattccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccct 38024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 125 - 328
Target Start/End: Original strand, 6885015 - 6885234
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttag-agggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||||||||| |||| ||||||||||| || |||||    
T  6885015 tgaagtgaataatataaaaatcatgatattgttttaaggttagcacggataaaaaggtaatttgattttaaaattcctccccttcccttatgaaccaaac 6885114  T
Q  224 acatatttgattaaaatctcttc----------cctcccatcatttgaagcaaatatatatttaattgatatatctc-----cccttccctcccctccat 308  Q
    |||||||| ||||||||| ||||          |||||||||||||||| |||||||||||||||||||||||||||     | ||||||||||||||||    
T  6885115 acatatttaattaaaatcccttctctccccctacctcccatcatttgaaccaaatatatatttaattgatatatctctccttctcttccctcccctccat 6885214  T
Q  309 taaaaccactcccctcccct 328  Q
    ||||||| ||| ||||||||    
T  6885215 taaaacccctctcctcccct 6885234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 125 - 297
Target Start/End: Complemental strand, 29119085 - 29118913
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||| | ||| | ||||||| ||||||||| ||||||||||||| ||||||||||||||| |||  | || | || ||||||    
T  29119085 tgaagtgaataatttaaaaatcgtaatactattttaagattagagggataaaaaagtaatttagttttaaaatccctcccctctctttgtgaaccaaaca 29118986  T
Q  225 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttcc 297  Q
     ||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||| ||||||||||||||    
T  29118985 tatatttgattaaaatctctcccctcccatcatttgaaccaatcatatatttaattgaaatatctccccttcc 29118913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 125 - 252
Target Start/End: Complemental strand, 37563915 - 37563788
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||| || ||||||    
T  37563915 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctccccttatgaaccaaaca 37563816  T
Q  225 catatttgattaaaatctcttccctccc 252  Q
     |||||| ||||||||||||| ||||||    
T  37563815 tatatttaattaaaatctctttcctccc 37563788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 49284074 - 49284259
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||||||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||| |||| |||| | || ||||||    
T  49284074 tgaagtgaataatttaaaaatcatgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctcccctt-ccttgtgaaccaaaca 49284172  T
Q  225 catatttgattaaaat-----ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
     |||||||||||||||     | |||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  49284173 tatatttgattaaaatccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatctcccattcccttccctcc 49284259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 125 - 290
Target Start/End: Complemental strand, 55873687 - 55873512
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||  ||| ||||| | || ||||||    
T  55873687 tgaagtgaataatttaaaaatcatgatattattttaagattagagggataaaaaagtaatttggttttaaaatctcttccctccccttgtgaaccaaaca 55873588  T
Q  225 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctc 290  Q
    ||||||| ||||||||||          ||||||| | ||| |||||| |||||||||||||||||||||||||||    
T  55873587 catatttaattaaaatctcccccctccccttcccttctatcgtttgaaccaaatatatatttaattgatatatctc 55873512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 125 - 252
Target Start/End: Complemental strand, 29191151 - 29191025
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||| || ||||||    
T  29191151 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctc-ccctcccgtatgaaccaaaca 29191053  T
Q  225 catatttgattaaaatctcttccctccc 252  Q
    |||| || ||||||||| |||| |||||    
T  29191052 catacttaattaaaatcccttcactccc 29191025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 234 - 325
Target Start/End: Complemental strand, 54975840 - 54975749
Alignment:
Q  234 ttaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcc 325  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  54975840 ttaaaatcccttccctcccatcatttgaaccaaatatatatttaattgatatatctccccttcccttccctccattaaaacccctcccctcc 54975749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 54975906 - 54975830
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccct 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  54975906 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatccct 54975830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 127 - 306
Target Start/End: Original strand, 42739582 - 42739771
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 226  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| ||||| | || |||||| |    
T  42739582 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctccccttgtgaaccaaacata 42739681  T
Q  227 tatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||||||||||          | ||||| |||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  42739682 tatttgattaaaatccctcccctccccttccgtcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 42739771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 1921336 - 1921145
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  1921336 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaattttgttttaaaatccctcccctaccctcgtgaaccaaaca 1921237  T
Q  225 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
     |||||||||||||||| || |||||          |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  1921236 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 1921145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 22443731 - 22443922
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||  | ||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  22443731 tgaagtgaataatttaaaaattgtaatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 22443830  T
Q  225 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
     |||||||||||||||| || |||||          |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  22443831 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 22443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 47497690 - 47497566
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 225  Q
    ||||||||||| | |||||||| | || ||||||||| ||||||||| |||||||||||||||| ||||||||| || ||| ||||| | || ||||||     
T  47497690 aagtgaataattttaaaatcataagatagttttaaggattagagggataaaaaagtaatttggtgttaaaatccttcacctccccttgtgaaccaaacat 47497591  T
Q  226 atatttgattaaaatctcttccctc 250  Q
    | |||| |||||||||||| |||||    
T  47497590 acatttaattaaaatctctcccctc 47497566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 29191258 - 29191204
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29191258 tagattattttagaagtgctttaatatttatgaatacctaatattttgttagaac 29191204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 54976019 - 54975965
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  54976019 tagattattttagaagtgctctaatatttatgaatatctaatattttgttagaac 54975965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 41279317 - 41279202
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 223  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| ||||||| | ||||||| ||  ||| ||||| | || ||||     
T  41279317 tgaagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaaagcaatttgg-tataaaatctcttccctccccttgtgaaccaaat 41279219  T
Q  224 acatatttgattaaaat 240  Q
    |||||||| ||||||||    
T  41279218 acatatttaattaaaat 41279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 38024414 - 38024465
Alignment:
Q  14 attattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  38024414 attattttagaagtgctctaatatttatgaatacctaatattttattagaac 38024465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 8067268 - 8067199
Alignment:
Q  139 taaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctcctt 207  Q
    |||||||||||||||||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||||    
T  8067268 taaaaatcatgatattgttttaagattaaagggataaaaaaagtaacttggatttaaaatccctctcctt 8067199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 294
Target Start/End: Original strand, 39593207 - 39593379
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 225  Q
    ||||| ||||| | |||||||||| || ||||||||| ||||| ||| ||||| |||||||||| |||||| ||||| ||| ||||| | || ||||||     
T  39593207 aagtggataattttaaaatcatgagatagttttaaggattagaaggataaaaaggtaatttggtgttaaaa-ccctcacctccccttctgaaccaaacat 39593305  T
Q  226 atatttgattaaaatctcttccctc-----ccatcatttgaagcaaatatatatttaattgatatatctcccct 294  Q
    | |||| |||||||||||| |||||     || || |||||| |||| | |||||||||| |||||||||||||    
T  39593306 acatttaattaaaatctctcccctccccttccctcttttgaaccaaacacatatttaattaatatatctcccct 39593379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 6884912 - 6884958
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6884912 tagattattttagaagtgctctaatatttatgaatacttaatatttt 6884958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 37564027 - 37563973
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||| |||||||    
T  37564027 tagattattttagaaacgctctaatatttatgaatacctaatattttattagaac 37563973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 30548114 - 30548051
Alignment:
Q  243 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    |||||||||| || |||||| |||| | |||||||||| | |||||||||||||||||||||||    
T  30548114 cttccctcccctcttttgaaccaaacacatatttaattaaaatatctccccttccctcccctcc 30548051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 55873804 - 55873758
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatatttt 57  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||    
T  55873804 tagattatcttagaagtgctataatatttatgaatacctaatatttt 55873758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 22443925 - 22443959
Alignment:
Q  294 ttccctcccctccattaaaaccactcccctcccct 328  Q
    |||||||||||||||||||||| ||||||||||||    
T  22443925 ttccctcccctccattaaaacccctcccctcccct 22443959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 38024718 - 38024752
Alignment:
Q  294 ttccctcccctccattaaaaccactcccctcccct 328  Q
    |||||||||||||||||||||| ||||||||||||    
T  38024718 ttccctcccctccattaaaacccctcccctcccct 38024752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 42739774 - 42739808
Alignment:
Q  294 ttccctcccctccattaaaaccactcccctcccct 328  Q
    |||||||||||||||||||||| ||||||||||||    
T  42739774 ttccctcccctccattaaaacccctcccctcccct 42739808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 131 - 298
Target Start/End: Original strand, 30411399 - 30411577
Alignment:
Q  131 gaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatt 230  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||| |||||    
T  30411399 gaataatataaaaatcatgatattgttttaaggctagagggataaaaaagtaatttggttttaaaatccatcccattcccttatgaatcaaacatatatt 30411498  T
Q  231 tgattaaaatct-----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccc 298  Q
    | ||||||||||           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  30411499 taattaaaatctcttccttcccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccc 30411577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 125 - 291
Target Start/End: Complemental strand, 35384347 - 35384171
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| || |||| || ||||||    
T  35384347 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctcccattatgaaccaaaca 35384248  T
Q  225 catatttgattaaaatctcttccc----------tcccatcatttgaagcaaatatatatttaattgatatatctcc 291  Q
    ||||||| ||||||||||||||||          |||||||||||||| |||| |||||||||||||||||||||||    
T  35384247 catatttaattaaaatctcttcccttcccttccgtcccatcatttgaaccaaacatatatttaattgatatatctcc 35384171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 1751486 - 1751295
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1751486 tgaagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1751387  T
Q  225 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
     |||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  1751386 tatatttgattaaaatctctcccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 1751295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 306
Target Start/End: Original strand, 11726579 - 11726762
Alignment:
Q  133 ataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttg 232  Q
    ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |||||||    
T  11726579 ataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacatatatttg 11726678  T
Q  233 attaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    |||||||||||          ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  11726679 attaaaatctctcccctccctttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 11726762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 10329701 - 10329894
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaa--aagtaatttggttttaaaatccctctccttcccttataaatcaaa 222  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||  ||||||||| ||||||||||||||| | | ||||| | || ||||    
T  10329701 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaaagtaatttagttttaaaatccctcccatccccttgtgaaccaaa 10329800  T
Q  223 cacatatttgattaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    || ||||||||||||||||||          ||||||||||||||||||| |||| |||||||||||||| |||||||||||||| | ||||||    
T  10329801 catatatttgattaaaatctctcccctctcattccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcctttccctcc 10329894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 37276135 - 37275944
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||| | ||||||||||| ||| ||| ||||| | || |||||     
T  37276135 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatgtagttttaaaatctctcccctccccttgtgaaccaaacc 37276036  T
Q  225 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
     |||||||||| ||||          | ||||||||||| |||||||| |||| |||||||||||||| |||||||||||||| | ||||||    
T  37276035 tatatttgattgaaatccctcccctccccttccctcccaccatttgaaccaaacatatatttaattgaaatatctccccttcctttccctcc 37275944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 35384460 - 35384406
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  35384460 tagattattttagaagtgctctaatatttatgaatacctaatattttgttcgaac 35384406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 30411279 - 30411333
Alignment:
Q  11 tagattattctagaagtgctctaatatttatgaatacctaatattttgttagaac 65  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  30411279 tagattattttagaagtgctctaatatttatggatatctaatattttgttagaac 30411333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 37275249 - 37275336
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 212  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||||| ||||||||||| ||| ||| |||||    
T  37275249 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatttagttttaaaatctctcccctcccctt 37275336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 37275334 - 37275397
Alignment:
Q  243 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
    ||||||||||| |||||||| |||| |||||||||||||| ||||||||| |||| | ||||||    
T  37275334 cttccctcccaccatttgaaccaaacatatatttaattgaaatatctcccattcctttccctcc 37275397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 25595631 - 25595669
Alignment:
Q  288 ctccccttccctcccctccattaaaaccactcccctccc 326  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  25595631 ctccctttccctcccctccattaaaacccctcccctccc 25595669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 127 - 304
Target Start/End: Complemental strand, 28174 - 27987
Alignment:
Q  127 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 226  Q
    ||||||||||  |||||||||||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  28174 aagtgaataagttaaaaatcatgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 28075  T
Q  227 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccct 304  Q
    ||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||    
T  28074 tatttgattaaaatctctcccgtccccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccct 27987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 46485484 - 46485675
Alignment:
Q  125 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 224  Q
    ||||||||||||| |||||||  || || ||||||||  ||||||||| ||||||||||||| ||||||||||||||  ||| ||||| | || ||||||    
T  46485484 tgaagtgaataatttaaaaattgtgttactgttttaatattagagggataaaaaagtaatttagttttaaaatccctgccctccccttgtgaaccaaaca 46485583  T
Q  225 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 306  Q
      ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||    
T  46485584 tgtatttgattaaaatccctcccttccccttccctcccatcatttgaaccaaacatatatttaattaaaatatctccccttcccttccctcc 46485675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 7311490 - 7311392
Alignment:
Q  141 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttgattaaaat 240  Q
    |||||||||| ||||||||||| ||||||||| ||||   ||||||| |||||||||| |||  || ||||| || | |||||| |||||| ||||||||    
T  7311490 aaaatcatgagattgttttaagattagagggataaaa---taatttgattttaaaatctctcgtctccccttctacaccaaacatatatttaattaaaat 7311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 46485678 - 46485712
Alignment:
Q  294 ttccctcccctccattaaaaccactcccctcccct 328  Q
    |||||||||||||||||||||| ||||||||||||    
T  46485678 ttccctcccctccattaaaacccctcccctcccct 46485712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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