View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_31 (Length: 213)
Name: NF15042_low_31
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 49974705 - 49974530
Alignment:
| Q |
19 |
acattgatcagagaaacggatttgaatttcattattatttcattctctgtcattacttgatatatgcttagatgtatttctcgcaaagaatcgacctcta |
118 |
Q |
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| T |
49974705 |
acattgatcagagaaacggatttgaatttcattattatttcattctctgtcattacttgatatatgctgagatgtatttctcgcaaagaatcgacctcta |
49974606 |
T |
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| Q |
119 |
atgactactttatatggttgcttagtgttatccgtatatatatgcagattgcagaagcaactattcattactactt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49974605 |
atgactactttatatggttgcttagtgttatccgtatatatatgcagattgcagaagcaactattcattactactt |
49974530 |
T |
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