View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15042_low_33 (Length: 203)

Name: NF15042_low_33
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15042_low_33
NF15042_low_33
[»] chr4 (4 HSPs)
chr4 (20-188)||(54396632-54396800)
chr4 (38-187)||(23587525-23587674)
chr4 (38-187)||(23596377-23596526)
chr4 (113-187)||(35132750-35132824)
[»] chr7 (16 HSPs)
chr7 (60-187)||(8102916-8103043)
chr7 (39-187)||(39985874-39986022)
chr7 (117-187)||(7877525-7877595)
chr7 (66-187)||(8602229-8602350)
chr7 (67-187)||(8590894-8591014)
chr7 (113-184)||(17260543-17260614)
chr7 (113-187)||(10494166-10494240)
chr7 (117-178)||(8382677-8382738)
chr7 (141-184)||(6789842-6789885)
chr7 (113-187)||(3147574-3147648)
chr7 (118-188)||(8017204-8017274)
chr7 (54-184)||(8585501-8585631)
chr7 (117-187)||(8636135-8636205)
chr7 (113-187)||(13333248-13333322)
chr7 (144-184)||(1301797-1301837)
chr7 (144-188)||(8659696-8659740)
[»] chr2 (6 HSPs)
chr2 (51-187)||(17716485-17716621)
chr2 (118-187)||(12234996-12235065)
chr2 (41-109)||(5445621-5445689)
chr2 (120-187)||(12245198-12245265)
chr2 (141-185)||(7542556-7542600)
chr2 (117-187)||(16657309-16657379)
[»] chr1 (1 HSPs)
chr1 (117-188)||(4678349-4678420)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 54396632 - 54396800
Alignment:
Q  20 ctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396632 ctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagca 54396731  T
Q  120 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396732 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 54396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 23587674 - 23587525
Alignment:
Q  38 agctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagct 137  Q
    |||||||||||| | |||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| ||||||    
T  23587674 agctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagct 23587575  T
Q  138 tgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  23587574 tgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 23596526 - 23596377
Alignment:
Q  38 agctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagct 137  Q
    |||||||||||| | |||||||||||| || |||||||| ||||| |||||||| |||| |||||| |  || |||||  |||||||||| || ||||||    
T  23596526 agctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagct 23596427  T
Q  138 tgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||||||| ||||| ||||| || ||||| || || ||||| ||||||||    
T  23596426 tgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 23596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  113 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 8e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 8102916 - 8103043
Alignment:
Q  60 gcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaat 159  Q
    ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || |||||||| |||||||||||||| |    
T  8102916 gcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagt 8103015  T
Q  160 aagcaggaacagtaacaacagcattctt 187  Q
    ||||||| ||||| || || ||||||||    
T  8103016 aagcagggacagtgacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 39985874 - 39986022
Alignment:
Q  39 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 138  Q
    |||||||| || | |||||||||||| ||||||||||| |||||||| ||||| | ||  ||||| | ||| | |||| | |||||||| || |||||||    
T  39985874 gctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagctt 39985973  T
Q  139 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||| || || ||||| || |||||||| ||||||||||||||||||||    
T  39985974 gacgctgggagtcattaaagtaagcagggacagtaacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  117 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 8602229 - 8602350
Alignment:
Q  66 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 165  Q
    ||||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| |    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccg 8602328  T
Q  166 gaacagtaacaacagcattctt 187  Q
    | ||||||||||| ||||||||    
T  8602329 gcacagtaacaactgcattctt 8602350  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 8590894 - 8591014
Alignment:
Q  67 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 166  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  167 aacagtaacaacagcattctt 187  Q
     ||||||||||| ||||||||    
T  8590994 cacagtaacaactgcattctt 8591014  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  113 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 184  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 10494240 - 10494166
Alignment:
Q  113 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattctt 10494166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  117 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 178  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  141 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 184  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  113 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 8017274 - 8017204
Alignment:
Q  118 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 188  Q
    |||| ||||| || || |||||||| || ||||||||||| ||||| ||||| |||||||| |||||||||    
T  8017274 caccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttc 8017204  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 8585631 - 8585501
Alignment:
Q  54 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 153  Q
    ||||| ||||| || |||||||| || ||||| || |||||||  ||||| |  || | ||| |||||||||||  | || ||||  || ||||||||||    
T  8585631 ccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcat 8585532  T
Q  154 tgaaataagcaggaacagtaacaacagcatt 184  Q
    ||||||||||||| ||||| ||||| |||||    
T  8585531 tgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  117 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 13333322 - 13333248
Alignment:
Q  113 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| ||||||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattctt 13333248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 1301797 - 1301837
Alignment:
Q  144 tgagaatcattgaaataagcaggaacagtaacaacagcatt 184  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 8659696 - 8659740
Alignment:
Q  144 tgagaatcattgaaataagcaggaacagtaacaacagcattcttc 188  Q
    |||||||||||||| || ||||| || ||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttc 8659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 17716621 - 17716485
Alignment:
Q  51 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaat 150  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||     
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaa 17716522  T
Q  151 cattgaaataagcaggaacagtaacaacagcattctt 187  Q
     ||| || |||||||| ||||||||||| ||||||||    
T  17716521 aattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 12234996 - 12235065
Alignment:
Q  118 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| ||||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 5445689 - 5445621
Alignment:
Q  41 tttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacc 109  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| || || ||||||| |||||| |||||    
T  5445689 tttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaacc 5445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  120 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 7542556 - 7542600
Alignment:
Q  141 cgttgagaatcattgaaataagcaggaacagtaacaacagcattc 185  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  117 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 187  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 4678420 - 4678349
Alignment:
Q  117 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 188  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttc 4678349  T

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