View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15042_low_4 (Length: 489)
Name: NF15042_low_4
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_4 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 158765 - 159216
Alignment:
| Q |
18 |
gatttgttgtcatcgtagactttcttaggtgtagtgttccgaactcgtagtttgtaaattttcaatccacattatttctcatattccacgcacctttcat |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
158765 |
gatttgttgtcatagtagactttcttaggtgtagtgttccgaactcgtagtttgtaaattttcaatccactttatttcacatattccacgcacctttcat |
158864 |
T |
|
| Q |
118 |
tcaaattctactcgagtaatgcttctggccagcatattctgtttctcacaaggttcccgtcaatgaatttacacgaaccataagttcatctcctatagat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
158865 |
tcaaattctactcgagtaatgcttctggccagcatattctgtttctcacaaggttcctgtcaatgaatttacaagaaccataagttcatctcctatagat |
158964 |
T |
|
| Q |
218 |
taaacaaattctactcgagcacttacttctctatgcatgtatccatgcttctaatagattaatcattttccttgtgaccaatttcgatacattgaaattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158965 |
taaacaaattctactcgagcacttacttctctatgcatgtatccatgcttctaatagattaatcattttccttgtgaccaatttcgatacattgaaattt |
159064 |
T |
|
| Q |
318 |
gtaaacaacttaagcgttgaaatcctggcgagtgatttagtcggcatatcaagcttactgcaaaagatatatctagacgagtatgaggcggataggtccg |
417 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
159065 |
gtaaacaacttaagtgttcaaatcctggcgagtgatttagtcggcatatcaagcttactgcaaaagatatatctagacgagtatgaggcagataggtccg |
159164 |
T |
|
| Q |
418 |
tctcaagatcatcagtctgacatatttctctatcaatcaatcacttcaccagcct |
472 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
159165 |
tctcacg---atcagtctgacatatttctctatcaatcaatcacttcaccagcct |
159216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 161008 - 161087
Alignment:
| Q |
110 |
cctttcattcaaattctactcgagtaatgcttctggccagcatattctgtttctcacaaggttcccgtcaatgaatttac |
189 |
Q |
| |
|
|||||||||||||||||||||||| | |||| || ||| || ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
161008 |
cctttcattcaaattctactcgagcactgctcctagccgccacattctgtttctcataaggttcccgtcaatgaatttac |
161087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University