View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_6 (Length: 464)
Name: NF15042_low_6
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 12268449 - 12268889
Alignment:
| Q |
8 |
agaagaaggtggaagtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaac |
107 |
Q |
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| T |
12268449 |
agaagaaggtggaagtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaac |
12268548 |
T |
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| Q |
108 |
ttacaaagtatgaaacacattttggaaatgttacaaaatcaccatagcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagt |
207 |
Q |
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| T |
12268549 |
gtacaaagtatgaaacacattttggaaatgttacaaaatcaccatatcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagt |
12268648 |
T |
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| Q |
208 |
cacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctat-aaaaaat |
306 |
Q |
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| T |
12268649 |
cacaaatgcagtagtggcta--------cccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaaaaat |
12268740 |
T |
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| Q |
307 |
aaaggtctaatgcaaatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagct |
406 |
Q |
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| T |
12268741 |
aaaggtctaatgcaaatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagct |
12268840 |
T |
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| Q |
407 |
agaagagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgt |
455 |
Q |
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| T |
12268841 |
agaagagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgt |
12268889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 12270163 - 12270276
Alignment:
| Q |
186 |
gtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttata |
285 |
Q |
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| T |
12270163 |
gtgagtaagtgttacaaaaagtcataaatgtagtagtggctaccaatcaccccatataaatattttcatttatttgcaataaattataaattactttaaa |
12270262 |
T |
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| Q |
286 |
gaatcgtttgctat |
299 |
Q |
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| T |
12270263 |
gaatcgttggctat |
12270276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 17032022 - 17032100
Alignment:
| Q |
26 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
106 |
Q |
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| T |
17032022 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 17562458 - 17562536
Alignment:
| Q |
26 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
106 |
Q |
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| T |
17562458 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
44 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
97 |
Q |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
44 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
97 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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