View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_7 (Length: 410)
Name: NF15042_low_7
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_7 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 8762350 - 8762744
Alignment:
| Q |
16 |
ccttgttcacctctatatgatgaaaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagggcttattccaaacc |
115 |
Q |
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| T |
8762350 |
ccttgttcacctctatatgatgaaaagctagtggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagagcttattccaaacc |
8762449 |
T |
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| Q |
116 |
tgttttgaccatgcccattattctccgcaacagcattggcttccaacttcgattttccaagcctaacttgttccaaatcttgaagagccaaccctttttg |
215 |
Q |
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| T |
8762450 |
tgttttgatcatggccactattctccacaacagcattggcttccaactttgattttccaagcctaacttgttccaaatcttgaagagccaaccctttttg |
8762549 |
T |
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| Q |
216 |
tatgtaagggaattggtcaacatgatgtgttggaaattggttgaaattgttaaaaacattgtttacacctcttgtttgatatgccagtgtttgcaaatat |
315 |
Q |
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| T |
8762550 |
tatgtaagggaattggtcaacatgatgtgttggaaattggttgaaattgttaaaaacattgtttacacctcttgtttgatatgccagtgtttgcaaatat |
8762649 |
T |
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| Q |
316 |
tgaagtgttggcgcaagaagtttgtttgttcttttttcttcgatttctctgatcacagaactcggaagacttgatgcaaaccgtgattctagagc |
410 |
Q |
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| T |
8762650 |
tgaagtgttggcgcaagaagtttgtttgttcttttttcttcgatttctctgatcacagaactcggaagacttgatgcaaaccttgattctagagc |
8762744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 8788881 - 8789050
Alignment:
| Q |
16 |
ccttgttcacctctatatgatgaaaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagggcttattccaaacc |
115 |
Q |
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| T |
8788881 |
ccttgttcacctctatatgatgaaaagctagtggaagcaccatcatggaatgaggtttttgcttgaaaaaatggaaggtttgaagagtttattccaaacc |
8788980 |
T |
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| Q |
116 |
tgttttgaccatgcccattattctccgcaacagcattggcttccaacttcgattttccaagcctaacttg |
185 |
Q |
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| T |
8788981 |
tgttttgaccatggccattattctccgcaacaacatcggcttccaactttgattttacaagcctaacttg |
8789050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 8789054 - 8789137
Alignment:
| Q |
234 |
aacatgatgtgttggaaattggttgaaattgttaaaaacattgtttacacctcttgtttgatatgccagtgtttgcaaatattg |
317 |
Q |
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| T |
8789054 |
aacatgatgtgttggaaattggttaaaatggttaaaaacattgtttgtacctcttgtttgatatgccagtgtatgcaaacattg |
8789137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 9554 - 9504
Alignment:
| Q |
49 |
gaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaa |
99 |
Q |
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| T |
9554 |
gaagcaccatcattgaaggagtttttcgcctgaaaaactgaaaggtttgaa |
9504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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