View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_8 (Length: 366)
Name: NF15042_low_8
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 114 - 350
Target Start/End: Complemental strand, 587480 - 587244
Alignment:
| Q |
114 |
tgtatcattcatgcccaactccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattc |
213 |
Q |
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| T |
587480 |
tgtatcattcatgcccaactccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattc |
587381 |
T |
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| Q |
214 |
aaccatataccgcaagcggacaatattctcgaaagacatgcaacatattttcaacatctccacaatgataacaataaggatgtccaatccgcatatagtt |
313 |
Q |
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| T |
587380 |
aaccatataccgcaagcggacaacattctcgaaagacatgcaatatattttcaacatctcaacaatgataacaataaggatgtccaattggcatatagtt |
587281 |
T |
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| Q |
314 |
cagcctgcaattcgtcatgagacggtcatgatgaagc |
350 |
Q |
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| T |
587280 |
caatctgcaattcgtcatgagacggtcatgatgaagc |
587244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 587623 - 587517
Alignment:
| Q |
1 |
tattgattgtccatgtaacaattaaccctccttgttccaagagttaagaggcattgtagcttcactatcatgactcaactgtttctccaagaccacaagg |
100 |
Q |
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| T |
587623 |
tattgattgtccatgtaacaattaaccctccttgttccaagagttaagaggcattgtagcttcactatgatgactcaactgtttctccaagaccacaagg |
587524 |
T |
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| Q |
101 |
catgaca |
107 |
Q |
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| T |
587523 |
catgaca |
587517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 32057965 - 32058052
Alignment:
| Q |
133 |
tccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattcaaccata |
220 |
Q |
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| T |
32057965 |
tccatgttcatatttaagccaatccaatgctgcaaatctgcttcaaaaaagttctctctttgattaataataactgtattcaaccata |
32058052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 26799298 - 26799390
Alignment:
| Q |
132 |
ctccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattcaaccatatacc |
224 |
Q |
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| T |
26799298 |
ctccatgctcaaatttaagtcaatccaatgctgcaaatatgcttcaaaaaagctctttctttgataaataccaactgtattcaaccatatacc |
26799390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32057812 - 32057924
Alignment:
| Q |
1 |
tattgattgtccatgtaacaattaaccctccttgt--------tccaagagttaagaggcattgtagcttcactatcatgactcaact-gtttctccaag |
91 |
Q |
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||||||| |||||| ||||||||||||||| |||| |||| |||||||||| ||| ||||||| |||||||| |||||||| ||||||||| |
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| T |
32057812 |
tattgatagtccatctaacaattaaccctcgttgtaatctccttccatgagttaagagacatcgtagctttactatcataactcaacttgtttctccata |
32057911 |
T |
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| Q |
92 |
accacaaggcatg |
104 |
Q |
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| T |
32057912 |
accacaaggcatg |
32057924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 26799236 - 26799280
Alignment:
| Q |
36 |
tccaagagttaagaggcattgtagcttcactatcatgactcaact |
80 |
Q |
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|||| |||||||||||||| |||||| ||||||||||||||||| |
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| T |
26799236 |
tccacgagttaagaggcatcatagcttgactatcatgactcaact |
26799280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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