View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15042_low_9 (Length: 354)
Name: NF15042_low_9
Description: NF15042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15042_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 21149295 - 21148964
Alignment:
| Q |
1 |
aaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgtatcatcttaaccgg |
100 |
Q |
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| T |
21149295 |
aaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgtatcatcttaaccgg |
21149196 |
T |
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| Q |
101 |
attctttgggaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaaatttgttggattgtgtcgatgatgtgtgatgcgtgaagtt |
200 |
Q |
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| T |
21149195 |
attctttgggaataagttaaggcttctaatgagcttttctgctcgttgatttggtgaaaaacttgttggattatgtcgatgatgtgtgatgcgtgaagtt |
21149096 |
T |
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| Q |
201 |
gcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttgctgtcttgtaagtggaaaggaaagagtgatg |
300 |
Q |
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| T |
21149095 |
gcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttgctgtcttttaag-----aggaaagagtgatg |
21149001 |
T |
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| Q |
301 |
caatggcaaagtttgtaaagcattggctatgcaaagt |
337 |
Q |
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| T |
21149000 |
caatggcaaagtttgtaaagcattggctatgcaaagt |
21148964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 21143479 - 21143210
Alignment:
| Q |
6 |
ccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacaga-atgaccatgtatcatcttaaccggattc |
104 |
Q |
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| T |
21143479 |
ccattagaatcactaaaaaacgagaacttcttctcgacgagttttccagggacaaaatgatcaat-agagtgatcaccatgaattatattaactggatcc |
21143381 |
T |
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| Q |
105 |
tttgggaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaaatttgttg--gattg-----tgtcgatgatgtgtgatgcgtgaa |
197 |
Q |
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| T |
21143380 |
tttggcaataagttaaagctttttataagcttttcagctcgttggtttggtgaaaattttggtgttgatgaaaaactat-gatgatgtgtgatgcgagaa |
21143282 |
T |
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| Q |
198 |
gttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttg |
269 |
Q |
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| T |
21143281 |
gttgcgtatgaagaagaaaacaaaacgaacaataacaaaagagatagagaggttttagagaatcccatgttg |
21143210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 21113612 - 21113542
Alignment:
| Q |
182 |
atgtgtgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggttt |
252 |
Q |
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| T |
21113612 |
atgtgtggtgcgagaagttgcatatgaggaagaaaataaaatgaacaacaacaaaagagacatagaggttt |
21113542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 21123552 - 21123402
Alignment:
| Q |
10 |
cagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgtatcatcttaaccggattctttgg |
109 |
Q |
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|||||| ||| |||||||||||||| ||||| ||||||||||| || | ||||| |||||| | || |||||| || | ||||| | | |||||| |
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| T |
21123552 |
cagaatcaccgaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaagagaatgatcaccatgaattacattaactgattgctttgg |
21123453 |
T |
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| Q |
110 |
gaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaa |
160 |
Q |
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| T |
21123452 |
gaataagttgaagcttcttataagcttttcagcttgttgatttggtgaaaa |
21123402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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