View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15043_low_1 (Length: 425)
Name: NF15043_low_1
Description: NF15043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15043_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 17104073 - 17104475
Alignment:
| Q |
18 |
gttcgaaatgaaatgttttcatttgttgttgtgaaaatgtacatgtt-gattttgaaaatataattagaatagttgtggttgtggaactaaatgttaatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17104073 |
gttcgaaatgaaatgttttcatttgtttttgtgaaaatgcacatgtttgattttgaaaatataattagaatagttgtggttgtggaactaaatgttaatc |
17104172 |
T |
|
| Q |
117 |
acattttactttggttaagtgaaatttctcgaagaaatcaaatgaaaactagtggtttggtagagtttaagattaaagaaattt-agtgaaaaatatgga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || |
|
|
| T |
17104173 |
acattttactttggttaagtgaaatttctcgaagaaatcaaatgaaaactagtggtttggtagagtttaagatgaaagaaatttgagtgaaaaatataga |
17104272 |
T |
|
| Q |
216 |
tattgtgccaagaatgacttcgagaataagcaatgtttatgtttgattattttcgttgcagccaatgtctttggaaaggcaaagacaaacacagacttct |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17104273 |
tattgtgccaagaatgactttgagaataagcaatgtttatgtttgattattttcgttgcagccaatgtctttggaaaggcaaagacaaacacagactttt |
17104372 |
T |
|
| Q |
316 |
tgccatacaatggagatggattcaaactgttggttccagcaaagtggaatccaagcaaagagagagaattccctggtcaggttcttagatacgagaataa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
17104373 |
tgccatacaatggagatggattcaaactgttggttccagcaaagtggaatccaagcaaagagagagagttccctggtcaggttcttagatacgaggataa |
17104472 |
T |
|
| Q |
416 |
ttt |
418 |
Q |
| |
|
||| |
|
|
| T |
17104473 |
ttt |
17104475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 406
Target Start/End: Original strand, 39369416 - 39369551
Alignment:
| Q |
271 |
ttgcagccaatgtctttggaaaggcaaagacaaacacagacttcttgccatacaatggagatggattcaaactgttggttccagcaaagtggaatccaag |
370 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||||||||| | ||||| ||||||||||||||||| | | ||||| |||||||||| || || |
|
|
| T |
39369416 |
ttgcagccaatgtgtttggaaaaccgaagacaaacacagacttcctaccatatgatggagatggattcaaattatcagttccctcaaagtggaaccctag |
39369515 |
T |
|
| Q |
371 |
caaagagagagaattccctggtcaggttcttagata |
406 |
Q |
| |
|
||||||| |||| | | ||||||||||||||||| |
|
|
| T |
39369516 |
caaagaggtggaatacacaggtcaggttcttagata |
39369551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University