View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15043_low_5 (Length: 206)

Name: NF15043_low_5
Description: NF15043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15043_low_5
NF15043_low_5
[»] chr7 (8 HSPs)
chr7 (19-199)||(39552685-39552865)
chr7 (19-199)||(39358682-39358862)
chr7 (20-199)||(39344106-39344285)
chr7 (19-199)||(39543462-39543642)
chr7 (19-199)||(39569523-39569703)
chr7 (19-199)||(39332836-39333016)
chr7 (78-148)||(39585472-39585542)
chr7 (78-146)||(39579142-39579210)
[»] chr4 (2 HSPs)
chr4 (82-148)||(2882148-2882214)
chr4 (101-154)||(2871849-2871902)
[»] chr8 (1 HSPs)
chr8 (109-146)||(4494209-4494246)
[»] chr1 (1 HSPs)
chr1 (103-146)||(2166851-2166894)
[»] chr2 (2 HSPs)
chr2 (101-154)||(44215153-44215206)
chr2 (121-154)||(44238464-44238497)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 39552685 - 39552865
Alignment:
Q  19 tcttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39552685 tcttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaa 39552784  T
Q  119 ttgcagcccatttaagagcttcttcatcattttcttggtggaaagaatttgaaaagatctcagcagcatctctgctcctcc 199  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  39552785 ttgcagcccatttaagagcttcttcatcatcttcttggtggaaagaatttgaaaagatctcagcagcatcactgttcctcc 39552865  T

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Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 39358862 - 39358682
Alignment:
Q  19 tcttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaa 118  Q
    |||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39358862 tcttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagcttctgaa 39358763  T
Q  119 ttgcagcccatttaagagcttcttcatcattttcttggtggaaagaatttgaaaagatctcagcagcatctctgctcctcc 199  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  39358762 ttgcagcccatttaagagattcttcatcatcttcttggtgaaaagaatttgaaaagatctcagcagcatcactgttcctcc 39358682  T

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Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 39344285 - 39344106
Alignment:
Q  20 cttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaat 119  Q
    ||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344285 cttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaat 39344186  T
Q  120 tgcagcccatttaagagcttcttcatcattttcttggtggaaagaatttgaaaagatctcagcagcatctctgctcctcc 199  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||| ||| ||||||    
T  39344185 tgcagcccatttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctgagcagcatcactgttcctcc 39344106  T

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Target: chr7; HSP #4
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 39543462 - 39543642
Alignment:
Q  19 tcttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaa 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||  |||  |||||||||||||| |||||| |||||||||||||||||||||    
T  39543462 tcttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttctgaa 39543561  T
Q  119 ttgcagcccatttaagagcttcttcatcattttcttggtggaaagaatttgaaaagatctcagcagcatctctgctcctcc 199  Q
    | |||||||||||||||||||||||||||| ||||||| | |||||||| ||||| |||||||||||||| ||| ||||||    
T  39543562 tggcagcccatttaagagcttcttcatcatcttcttggcgaaaagaattagaaaaaatctcagcagcatcactgttcctcc 39543642  T

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Target: chr7; HSP #5
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 39569523 - 39569703
Alignment:
Q  19 tcttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaa 118  Q
    ||||||| |||||| ||||||| ||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||    
T  39569523 tcttgcagcccaagcttctcaatatcaatctcaacggcttccccttgaagtgaagtgagcaaacctttcctcaaacgcgcaaaagtaggaagattctgaa 39569622  T
Q  119 ttgcagcccatttaagagcttcttcatcattttcttggtggaaagaatttgaaaagatctcagcagcatctctgctcctcc 199  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||| ||||||||||    
T  39569623 ttgcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatcactgctcctcc 39569703  T

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Target: chr7; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 39333016 - 39332836
Alignment:
Q  19 tcttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaa 118  Q
    ||||||| |||||||||||||||||| |||||  ||| | | |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||    
T  39333016 tcttgcatcccaaggttctcaacatcaatctcgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaaggatctgaa 39332917  T
Q  119 ttgcagcccatttaagagcttcttcatcattttcttggtggaaagaatttgaaaagatctcagcagcatctctgctcctcc 199  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| || ||||| ||| ||||||    
T  39332916 ttgcagcccatttaagagcttcttcatcatctccttggtggaaagaatttgaaaaaatctcggctgcatcactgttcctcc 39332836  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 39585472 - 39585542
Alignment:
Q  78 caaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcat 148  Q
    ||||||| ||||||| ||| ||| ||| |||||  ||||||||||||||||||| | ||| ||||||||||    
T  39585472 caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatcat 39585542  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 39579142 - 39579210
Alignment:
Q  78 caaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatc 146  Q
    ||||||| ||||||| ||| ||| ||| |||||  ||||||||||||||||||| | ||| ||||||||    
T  39579142 caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatc 39579210  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 2882214 - 2882148
Alignment:
Q  82 cctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcat 148  Q
    |||||||||||||| | | ||||||| ||||| | || |||||||||||||||||||||||||||||    
T  2882214 cctttcctcaaacggttataagtagggagtttttcaagtgcagcccatttaagagcttcttcatcat 2882148  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 2871902 - 2871849
Alignment:
Q  101 aagtaggaagtttctgaattgcagcccatttaagagcttcttcatcattttctt 154  Q
    ||||||| ||||| | ||||||||||||||| || ||||||||||||| |||||    
T  2871902 aagtagggagtttttcaattgcagcccatttgagggcttcttcatcatcttctt 2871849  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 4494246 - 4494209
Alignment:
Q  109 agtttctgaattgcagcccatttaagagcttcttcatc 146  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4494246 agtttctcaattgcagcccatttaagagcttcttcatc 4494209  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 2166851 - 2166894
Alignment:
Q  103 gtaggaagtttctgaattgcagcccatttaagagcttcttcatc 146  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||    
T  2166851 gtaggaagtctctcaatagcagcccatttaagagcttcttcatc 2166894  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 44215153 - 44215206
Alignment:
Q  101 aagtaggaagtttctgaattgcagcccatttaagagcttcttcatcattttctt 154  Q
    ||||||| ||||| | || |||||||||||| |||||||||||||||| |||||    
T  44215153 aagtaggtagtttttcaagtgcagcccatttgagagcttcttcatcatcttctt 44215206  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 44238464 - 44238497
Alignment:
Q  121 gcagcccatttaagagcttcttcatcattttctt 154  Q
    |||||||||||||||||||||||||||| |||||    
T  44238464 gcagcccatttaagagcttcttcatcatcttctt 44238497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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