View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15044_high_1 (Length: 405)
Name: NF15044_high_1
Description: NF15044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15044_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 385
Target Start/End: Original strand, 18126498 - 18126874
Alignment:
| Q |
9 |
ttggtttcaactattgaaatatatgcttggattttgacatgctttgaatgtttagttattgacttcttcaattgattttagccttgaatcaattatacat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18126498 |
ttggtttcaactattgaaatatatgcttggattttgacactcttagaatgtttagttattgacttcttcaattgattttagccttgaatcaattatacat |
18126597 |
T |
|
| Q |
109 |
aatcaattcattcaaattcaatttatgtcgttgcaaaaccaaacacagaccgagctttctaaagcatccttagtggcgcaattaaggtcaagttgtttaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
18126598 |
aatcaattcattcaaattcaatttatgccgttgcaaaacca--------ccgagctttctaaagcatccctggtggcgcaattaaggtcaagttgtttaa |
18126689 |
T |
|
| Q |
209 |
ctaaa-ttttggtcgggtctttcatgacacaacaacatttagtaatttagatttaggataggaataggatattcttatgatatttttattcaataacaca |
307 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18126690 |
ctaaaattttggtcgggtctttcatgccacaacaacatttagtaatttagatttaggataggaataggatattcttatgatatttttattcaataacaca |
18126789 |
T |
|
| Q |
308 |
attatatagaaacttaaaaatacatt-------catttggctttcacatgtgtatatgctccaacgataaagtcaataaaggtac |
385 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18126790 |
attatatagaaacttaaaaatacattaataatacatttggctttcacatgtgtatatgctccaacgataaagtcaataaaggtac |
18126874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 5973654 - 5973600
Alignment:
| Q |
94 |
gaatcaattatacataatcaattcattcaaattcaatttatgtcgttgcaaaacc |
148 |
Q |
| |
|
||||||||| |||| |||||||||||| ||| |||| || ||||||||||||||| |
|
|
| T |
5973654 |
gaatcaattttacaaaatcaattcattaaaaatcaaattttgtcgttgcaaaacc |
5973600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 24364142 - 24364081
Alignment:
| Q |
94 |
gaatcaattatacataatcaattcattcaaattcaatttatgtcgttgcaaaaccaaacaca |
155 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| |||| | ||||||||||||| |
|
|
| T |
24364142 |
gaatcaattttacataatcaattcattcaaaatcaatttttgtcatcataaaaccaaacaca |
24364081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 579065 - 579093
Alignment:
| Q |
94 |
gaatcaattatacataatcaattcattca |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
579065 |
gaatcaattatacataatcaattcattca |
579093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 44771864 - 44771900
Alignment:
| Q |
95 |
aatcaattatacataatcaattcattcaaattcaatt |
131 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
44771864 |
aatcaattttacataatcaattcattcaaaatcaatt |
44771900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University