View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15044_high_3 (Length: 288)
Name: NF15044_high_3
Description: NF15044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15044_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 38759722 - 38759869
Alignment:
| Q |
16 |
ttttcaattacaaacattcatcttcttcgtatatttcaacactannnnnnnn-gttgaagaaaataaacatgtatacggcatcccgtttcaagaaatgag |
114 |
Q |
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| T |
38759722 |
ttttcaattacaaacattcatcttcttcgtatatttcaacactgtttttttttgttgaagaaaataaacctgtatatggcatccagtttcaagaaatgag |
38759821 |
T |
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| Q |
115 |
ctcattaatatggcatagaaaaggtcagaaaggttaataagagagaga |
162 |
Q |
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| T |
38759822 |
ctcattaatatgatatagaaaaggccatcaaggttaataagagagaga |
38759869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 22689599 - 22689748
Alignment:
| Q |
16 |
ttttcaattacaaacattcatcttcttcgtatatttcaacactannnnnnnngttgaagaaaataaacatgtatacggcatcccgtttcaagaaatgagc |
115 |
Q |
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| T |
22689599 |
ttttcaatta-aaacattcatcttcttcgtatatttcaacactgtttttttt-tggaagaaaataaacttgcatatggcattcagtttcaagaaatgagg |
22689696 |
T |
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| Q |
116 |
tcattaatatggcatagaaaaggtcagaaaggttaataagagagagagaaaa |
167 |
Q |
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| T |
22689697 |
tcattaatatggcataggaaaggctagaaaggttagtaaaagagagaaaaaa |
22689748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 3931652 - 3931499
Alignment:
| Q |
16 |
ttttcaattacaaacattcatcttcttcgtatatttcaacactannnnnnnn--gttgaagaaaataaacatgtatacggcatcccgtttcaagaaatga |
113 |
Q |
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| T |
3931652 |
ttttcaattgcaaacattcatcttcgtcgtatatttcaaaactgttttttttttgttgaagaaaataaacctgtatatagcatccagtttcaagaaatga |
3931553 |
T |
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| Q |
114 |
gctcattaatatggcatagaaaaggtcagaaaggttaataagagagagagaaaa |
167 |
Q |
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| T |
3931552 |
gctcattaatatgacatagaaaaggccagaaaggttaataagagagagaaaaaa |
3931499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 5160929 - 5160992
Alignment:
| Q |
100 |
gtttcaagaaatgagctcattaatatggcatagaaaaggtcagaaaggttaataagagagagaga |
164 |
Q |
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| T |
5160929 |
gtttcaagaaaggagctctttaatatggcacagaaaatgtga-aaaagttaataagagagagaga |
5160992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 44902276 - 44902210
Alignment:
| Q |
100 |
gtttcaagaaatgagctcattaatatggcatagaaaaggtcagaaaggttaataagagagagagaaaa |
167 |
Q |
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| T |
44902276 |
gtttcaagaaaggagttctttaatatgacacagaaaaggtga-aaagattaataagagagagagaaaa |
44902210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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