View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15044_high_4 (Length: 250)
Name: NF15044_high_4
Description: NF15044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15044_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 432862 - 432747
Alignment:
| Q |
10 |
tagagtgtgcaaaataaaactaactaccttctaagataacaaatcgattagaacaaatatccgacccaaactaattcatcttcatttgatgatccataac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
432862 |
tagagtgtgcaaaataaaactaactaccttctaagataacaaatcgattagaacaaatatccgacccaaactaattcatcttcatttgatgatccataac |
432763 |
T |
|
| Q |
110 |
aataataattattagt |
125 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
432762 |
aataataattattagt |
432747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 432711 - 432610
Alignment:
| Q |
141 |
acacactattaataatatacttagatgcaggaaagttttcagttttgtttccaaaaaccaaatataattttgtgaaattaaaggcacgagttagcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
432711 |
acacactattaataatatacttagatgcaggaaagttttcagttttgtttccaaaaaccaaatataattttgtgaaattaaaggcacgagttagccaatg |
432612 |
T |
|
| Q |
241 |
ct |
242 |
Q |
| |
|
|| |
|
|
| T |
432611 |
ct |
432610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University