View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15044_low_2 (Length: 334)
Name: NF15044_low_2
Description: NF15044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15044_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 1496951 - 1496668
Alignment:
| Q |
18 |
gatgctacagatgctgctagaagtgcttctgatattgtcctcactgaacccggtcttagtgtcattattagcgccgtgctcaccagccgagcgatttttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1496951 |
gatgctacagatgctgctagaagtgcttctgatattgtcctcactgaacccggtcttagtgtcattattagcgctgtgctcaccagccgagcgatttttc |
1496852 |
T |
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| Q |
118 |
aaaggatgaagaattatactgttagtttccttgcatatccaattcaatattttgaatttactaaannnnnnnnagttgagtaatcgcaaaaagtttgatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1496851 |
aaaggatgaagaattatactgttagtttccttgcatatccaattcaatattttgaatttactaaattttttttagttgagtaatcgcaaaaagtttgatt |
1496752 |
T |
|
| Q |
218 |
gttgaacagatttatgctgtgtcaatcaccatccgtattgtggtaagtgttgaaatttgtttgatgcaaaaaatatttcaactt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1496751 |
gttgaacagatttatgctgtgtcaatcaccatccgtattgtggtaagtgttgaaatttgtttgatgcaaaaaatatttcaactt |
1496668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 1462689 - 1462941
Alignment:
| Q |
18 |
gatgctacagatgctgctagaagtgcttctgatattgtcctcactgaacccggtcttagtgtcattattagcgccgtgctcaccagccgagcgatttttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || || |||||||||||| | | ||||| | |
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| T |
1462689 |
gatgctacagatgctgctagaagtgcttctgatattgtcctcactgaacctggtctcagtgtcattatcagtgctgtgctcaccagcaggtccattttcc |
1462788 |
T |
|
| Q |
118 |
aaaggatgaagaattatactgttagtttccttgcatatccaattcaatattttgaatttactaaannnnnnnnagttgagtaatcgcaaaaagtttgatt |
217 |
Q |
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| T |
1462789 |
agagaatgaagaattataccgtaagtttccatgcgtatctaattcaatcttttgactttacttaattttttttagtgttctaatgacaaaatgtttggtt |
1462888 |
T |
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| Q |
218 |
gttgaacagatttatgctgtgtcaatcaccatccgtattgtggtaagtgttgaa |
271 |
Q |
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| T |
1462889 |
g-tgaacagatttatgctgtgtcaatcaccatccgtatcgtggtatgtgttgaa |
1462941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 26790438 - 26790689
Alignment:
| Q |
18 |
gatgctacagatgctgctagaagtgcttctgatattgtcctcactgaacccggtcttagtgtcattattagcgccgtgctcaccagccgagcgatttttc |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| | || ||||| | |
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| T |
26790438 |
gatgccacagatgctgctagaagtgcttctgatattgtcctcactgaacctggtcttagtgtcattatcagtgccgtgctcaccagcagggccattttcc |
26790537 |
T |
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| Q |
118 |
aaaggatgaagaattatactgttagtttccttgcatatccaattcaatattttgaatttactaaannnnnnnnagttgagtaatcgcaaaaagtttgatt |
217 |
Q |
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| || |||||||| ||||| |||||||||| ||||||| ||||| |||||| || |||| | |||| ||||| ||||| |||||||| |
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| T |
26790538 |
agagaatgaagaactatacggttagtttccatgcatat----atcaatcttttgacttcactata-cgtttttagttttctaatcacaaaatgtttgatt |
26790632 |
T |
|
| Q |
218 |
gttgaacagatttatgctgtgtcaatcaccatccgtattgtggtaagtgttgaaatt |
274 |
Q |
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| T |
26790633 |
atgtaacagatttatgccgtgtcaatcaccatccgtatcgtggtatgtgttaaaatt |
26790689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 50276239 - 50276368
Alignment:
| Q |
18 |
gatgctacagatgctgctagaagtgcttctgatattgtcctcactgaacccggtcttagtgtcattattagcgccgtgctcaccagccgagcgatttttc |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||||| ||| | || ||||| | |
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| T |
50276239 |
gatgctacagatgctgctagaggtgcttctgatattgtccttactgagcccggtctgagtgtcattattagtgcagtgctcacaagcagggcaattttcc |
50276338 |
T |
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| Q |
118 |
aaaggatgaagaattatactgttagtttcc |
147 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
50276339 |
aaaggatgaagaactatactgttagtttcc |
50276368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 50276441 - 50276481
Alignment:
| Q |
224 |
cagatttatgctgtgtcaatcaccatccgtattgtggtaag |
264 |
Q |
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| T |
50276441 |
cagatctatgctgtgtcaattaccatccgtattgtggtaag |
50276481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 48664601 - 48664719
Alignment:
| Q |
18 |
gatgctacagatgctgctagaagtgcttctgatattgtcctcactgaacccggtcttagtgtcattattagcgccgtgctcaccagccgagcgatttttc |
117 |
Q |
| |
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|||||||||||||| || ||||||||| ||||||| ||| | ||||| || || | ||||| ||||| ||||| ||| | || |||||||| || |||| |
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| T |
48664601 |
gatgctacagatgccgcaagaagtgctgctgatatagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaactagccgagctatatttc |
48664700 |
T |
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| Q |
118 |
aaaggatgaagaattatac |
136 |
Q |
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|||||||||| |||||||| |
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| T |
48664701 |
aaaggatgaaaaattatac |
48664719 |
T |
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