View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15045_high_2 (Length: 281)
Name: NF15045_high_2
Description: NF15045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15045_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 118 - 277
Target Start/End: Complemental strand, 29781084 - 29780925
Alignment:
| Q |
118 |
cataaataacaatgttaatctcaaaaaatcttacaattcttctcaacaaaattttcaaattgcttcaccaggaagctaactaccttactagaaattagat |
217 |
Q |
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| T |
29781084 |
cataaataacaatgtttatctcaaaaaatcttacaattcttctcaacaaaattttcaaattgcttcaccaggaagctaactaccttcctagaaattagat |
29780985 |
T |
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| Q |
218 |
cattacaactaaagttttcctagtaggtgagattggctacataaattaattgatgatgtc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29780984 |
cattacaactaaagttttcctagtaggtgagattggctacataaattaattgatgatgtc |
29780925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 29781242 - 29781140
Alignment:
| Q |
19 |
attgacgcctatttagtggcagggcaaatggtgagac-catattgttctgccaaattttaccaatacaacttacttatagtgacaatatgggaaaagatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
29781242 |
attgacgcctatttagtggcagggcaaatggtgacaatcatattggtctgccaaattttaccaatacaacctacttatagtgacaatatggtaaaagatt |
29781143 |
T |
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| Q |
118 |
cat |
120 |
Q |
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||| |
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| T |
29781142 |
cat |
29781140 |
T |
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