View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15045_high_3 (Length: 220)
Name: NF15045_high_3
Description: NF15045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15045_high_3 |
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| [»] scaffold0087 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 5884518 - 5884711
Alignment:
| Q |
16 |
tattttttatcaataattaattgtagtgaaaagcttcaactgagagagtgatatgtcgcaatgtcttcatcaatccaagagtagtctttggagttctctt |
115 |
Q |
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| T |
5884518 |
tattttttatcaataattaattgtagtgaaaagcttcaactgagagagtaatatgtcgcaatgtcttcatcaatccaagagtattctttggagttctctt |
5884617 |
T |
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| Q |
116 |
cagccatcaccattgttctttatatatacata---agagtgcaagaagttatctttcttggtgtgtatttcagcttcttcctaaactactttct |
206 |
Q |
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| T |
5884618 |
cagccatcaccattgttctttatatatatatacatagagtgcaagaagttatctttcttggtgtgtatttcagattcttcctaaactactttct |
5884711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 5854538 - 5854617
Alignment:
| Q |
110 |
tctcttcagccatcaccattgttctttatatatacataagagtgcaagaagttatctttcttggtgtgtatttcagcttctt |
191 |
Q |
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| T |
5854538 |
tctcttcagccatcaccgttgtacttgatatatt-ata-gagtgcatgaagttatctttcttggtctatattttagattctt |
5854617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 5831432 - 5831464
Alignment:
| Q |
57 |
gagagagtgatatgtcgcaatgtcttcatcaat |
89 |
Q |
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| T |
5831432 |
gagagagtgatatgtcacaatgtcttcatcaat |
5831464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 14088 - 14132
Alignment:
| Q |
45 |
aaagcttcaactgagagagtgatatgtcgcaatgtcttcatcaat |
89 |
Q |
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| T |
14088 |
aaagcatcaactgagagagtgatatgtcacaatgtcttcatcaat |
14132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 21153 - 21197
Alignment:
| Q |
45 |
aaagcttcaactgagagagtgatatgtcgcaatgtcttcatcaat |
89 |
Q |
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| T |
21153 |
aaagcatcaactgagagagtgatatgtcacaatgtcttcatcaat |
21197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 31538 - 31592
Alignment:
| Q |
87 |
aatccaagagtagtctttggagttctcttcagccatcaccattgttctttatata |
141 |
Q |
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| T |
31538 |
aatccaagagtattctttggagttttcttcagacatcaccattgttgtttgtata |
31592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 35501 - 35534
Alignment:
| Q |
56 |
tgagagagtgatatgtcgcaatgtcttcatcaat |
89 |
Q |
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| T |
35501 |
tgagagagtgatatgtcacaatgtcttcatcaat |
35534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 31473 - 31517
Alignment:
| Q |
44 |
aaaagcttcaactgagagagtgatatgtcgcaatgtcttcatcaa |
88 |
Q |
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| T |
31473 |
aaaagcttcaattgagagagtgatatgtcacaacgtcttaatcaa |
31517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9630782 - 9630754
Alignment:
| Q |
1 |
aagtgcaattaagcctattttttatcaat |
29 |
Q |
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| T |
9630782 |
aagtgcaattaagcctattttttatcaat |
9630754 |
T |
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