View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15045_low_2 (Length: 315)

Name: NF15045_low_2
Description: NF15045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15045_low_2
NF15045_low_2
[»] chr2 (3 HSPs)
chr2 (82-189)||(37154889-37154996)
chr2 (106-175)||(44673174-44673243)
chr2 (101-166)||(25438286-25438351)
[»] chr4 (3 HSPs)
chr4 (101-175)||(39599166-39599240)
chr4 (106-166)||(2588517-2588577)
chr4 (106-175)||(16497927-16497996)
[»] chr5 (3 HSPs)
chr5 (100-175)||(7992425-7992500)
chr5 (106-160)||(12905012-12905066)
chr5 (106-175)||(32325828-32325897)
[»] chr7 (3 HSPs)
chr7 (101-175)||(36167748-36167822)
chr7 (106-175)||(19886576-19886645)
chr7 (93-175)||(12859262-12859344)
[»] chr8 (5 HSPs)
chr8 (106-175)||(20900778-20900847)
chr8 (106-175)||(34784536-34784605)
chr8 (130-178)||(3277546-3277594)
chr8 (111-175)||(29168563-29168627)
chr8 (106-175)||(1548141-1548210)
[»] chr3 (4 HSPs)
chr3 (101-166)||(53208711-53208776)
chr3 (98-166)||(9454600-9454668)
chr3 (114-176)||(7322867-7322929)
chr3 (105-175)||(32130159-32130229)
[»] scaffold0302 (1 HSPs)
scaffold0302 (103-174)||(17086-17157)


Alignment Details
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 37154996 - 37154889
Alignment:
Q  82 cttgtttgaacactcacaagcaatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttcaatttt 181  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||  |||||||||||||    
T  37154996 cttgtttgaatactcacaagcaatgtagtcaagaacgagtcccggctcgtaggatcgcacgatcttacgtgccacgacatctcgaccgtgcttcaatttt 37154897  T
Q  182 tactctga 189  Q
    ||||||||    
T  37154896 tactctga 37154889  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 44673174 - 44673243
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||||| |||||||||||  | ||||||||| ||||||||||||||||||| || |||||  |||||||    
T  44673174 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 44673243  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 25438286 - 25438351
Alignment:
Q  101 gcaatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcga 166  Q
    |||| ||||||| |||||||||||  | ||||||||| || |||||||||||||||| || |||||    
T  25438286 gcaaggtagtcaggaacgagtcccagcacgtaggatcgcatgatcttacgtgccacagcacctcga 25438351  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 39599240 - 39599166
Alignment:
Q  101 gcaatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||||||| ||||| ||||||||  ||||||||||| ||||||||||||| |||||||| ||| ||||||||||    
T  39599240 gcaatgtagccaagatcgagtcccagctcgtaggatcacacgatcttacgttccacaacacctcaattgtgcttc 39599166  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 2588577 - 2588517
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcga 166  Q
    ||||||| |||||||||||  | ||||||||| ||||||||||||||||||| || |||||    
T  2588577 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcga 2588517  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 16497996 - 16497927
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    |||||||||||||||||||  | ||||||||| ||||||| || |||||||| || |||||  |||||||    
T  16497996 gtagtcaagaacgagtcccagcacgtaggatcgcacgatcgtatgtgccacagcacctcgaccgtgcttc 16497927  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 7992500 - 7992425
Alignment:
Q  100 agcaatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||| ||||||| |||||||||||  | ||||||||| ||||||||||||||||||| || |||||  |||||||    
T  7992500 agcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 7992425  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 12905066 - 12905012
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaaca 160  Q
    ||||||| |||||||| ||  | ||||||||| ||||||||||||||||||||||    
T  12905066 gtagtcaggaacgagttccagcacgtaggatcgcacgatcttacgtgccacaaca 12905012  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 32325897 - 32325828
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||||| |||||||||||  | ||||||||| ||||||| ||||||||||| || |||||  |||||||    
T  32325897 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcgtacgtgccacagcacctcgaccgtgcttc 32325828  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 36167822 - 36167748
Alignment:
Q  101 gcaatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    |||| ||||||| |||||||||||  | ||||||||| ||||||||||||||||||| || |||||  |||||||    
T  36167822 gcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 36167748  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 19886576 - 19886645
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||||| |||||||||||  | ||||||||| ||||||||||||||||||| || |||||  |||||||    
T  19886576 gtagtcaggaacgagtcccagcacgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttc 19886645  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 12859344 - 12859262
Alignment:
Q  93 actcacaagcaatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    |||||||  ||| ||||||| ||| |||||||  | ||||||||| ||||||||||||||||||| || |||||  |||||||    
T  12859344 actcacattcaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 12859262  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 20900778 - 20900847
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||||| |||| ||||||  | ||||||||| ||||||||||||||||||| || ||||| ||||||||    
T  20900778 gtagtcaggaacaagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgactgtgcttc 20900847  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 34784605 - 34784536
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||||| |||||||||||  | ||||||||| ||||||||||||||||||| || |||||  |||||||    
T  34784605 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 34784536  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 3277546 - 3277594
Alignment:
Q  130 gtaggatcccacgatcttacgtgccacaacatctcgattgtgcttcaat 178  Q
    |||||||| |||||||||||||||||||||| |||||  ||||||||||    
T  3277546 gtaggatcgcacgatcttacgtgccacaacacctcgaccgtgcttcaat 3277594  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 29168627 - 29168563
Alignment:
Q  111 caagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||||||| ||||  ||||||||||| ||||||||||||||||||| || |||||  |||||||    
T  29168627 caagaacgactcccagctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttc 29168563  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 1548141 - 1548210
Alignment:
Q  106 gtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    ||||||| |||||||||||  |  |||||||| ||||||||||||||||||| || |||||  |||||||    
T  1548141 gtagtcaggaacgagtcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaacgtgcttc 1548210  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 53208776 - 53208711
Alignment:
Q  101 gcaatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcga 166  Q
    |||| ||||||| |||||||||||  | ||||||||| ||||||||||||||||||| || |||||    
T  53208776 gcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcga 53208711  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 9454600 - 9454668
Alignment:
Q  98 caagcaatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcga 166  Q
    ||||||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||| || |||||    
T  9454600 caagcaaggtagtcaagaacgattcccagcatgtaggatcgcacgatcttacgtgccacagcacctcga 9454668  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 7322867 - 7322929
Alignment:
Q  114 gaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttca 176  Q
    |||||||||||  | ||||||||| ||||||||||||||||||| || |||||  ||||||||    
T  7322867 gaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttca 7322929  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 32130159 - 32130229
Alignment:
Q  105 tgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgcttc 175  Q
    |||||||| ||||||||| |  | ||||||||| ||||||||||||||||||| || |||||  |||||||    
T  32130159 tgtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 32130229  T

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Target: scaffold0302 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 17086 - 17157
Alignment:
Q  103 aatgtagtcaagaacgagtcccgactcgtaggatcccacgatcttacgtgccacaacatctcgattgtgctt 174  Q
    ||||||| |||||  ||||||| ||| |||||||  ||||||||||| | |||||||| |||||||||||||    
T  17086 aatgtagccaagattgagtcccaacttgtaggattgcacgatcttacattccacaacacctcgattgtgctt 17157  T

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