View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15045_low_6 (Length: 217)
Name: NF15045_low_6
Description: NF15045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15045_low_6 |
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| [»] scaffold0777 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 24929752 - 24929918
Alignment:
| Q |
36 |
gaaaagaaggagaaacaccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgttacacagcagaaaaaactaaagagaaaat |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
24929752 |
gaaaagaaggagaaacaccgcttattctcggcgccgctagtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaat |
24929851 |
T |
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| Q |
136 |
tcacttcagaaagctccgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaatt |
202 |
Q |
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| T |
24929852 |
ccacttcagaaagctatgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaatt |
24929918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 2181 - 2015
Alignment:
| Q |
36 |
gaaaagaaggagaaacaccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgttacacagcagaaaaaactaaagagaaaat |
135 |
Q |
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|||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||||||| |||| | || ||||||| |||||||||||||||| |
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| T |
2181 |
gaaaagaaggagaaacaccgctcattctccgcgccactagtgataaaagaaccgtcagaacatgactctgatgcaaagcagaagaaactaaagagaaaat |
2082 |
T |
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| Q |
136 |
tcacttcagaaagctccgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaatt |
202 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
2081 |
ccacttcagaaagctacgatgaaaagatgaagaaaccattaatcattgatgaggaaccagaagaatt |
2015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 2343 - 2274
Alignment:
| Q |
36 |
gaaaagaaggagaaacaccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctg |
105 |
Q |
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| T |
2343 |
gaaaagaaggagaaacaccgctcattctccgcgccactagtgataaaagaaccgtcagaacatgactctg |
2274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 2501 - 2436
Alignment:
| Q |
40 |
agaaggagaaacaccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctg |
105 |
Q |
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|||||||||||||| || ||||||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
2501 |
agaaggagaaacacaactcattctcggcgccgttagtgataaaagaacagtcagaacatgattctg |
2436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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