View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15046_high_1 (Length: 519)
Name: NF15046_high_1
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15046_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 211 - 511
Target Start/End: Complemental strand, 5896628 - 5896332
Alignment:
| Q |
211 |
gtaggctggtcagcaggtgatggcatcagcacaaggggctgctgaagctgtgaagaatgcaactggaattaacaaaaagtgatccaattaagcagaaggg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896628 |
gtaggctggtcagcaggtgatggcatcagcacaaggggctgctgaagctgtgaagaatgcaactggaattaacaaaaagtgatccaattaagcagaaggg |
5896529 |
T |
|
| Q |
311 |
atcctagtaattaatccagttttactcggttttattttcttcttctagggcattatgtataaaaaagtgctctaatttgtgtttgtaattttgttttgct |
410 |
Q |
| |
|
|||||||| || |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896528 |
atcctagtcat----ccagttttactcagttttttttctttcttctagggcattatgtataaaaaagtgctctaatttgtgtttgtaattttgttttgct |
5896433 |
T |
|
| Q |
411 |
cccaattagatatcttgtgaataactctttgtttcaacgagagaactaggatgtagttctcggttaattcattaatcaatgaaatttatattagaataat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896432 |
cccaattagatatcttgtgaataactctttgtttcaacaagagaactaggatgtagttctcggttaattcattaatcaatgaaatttatattagaataat |
5896333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 5896812 - 5896689
Alignment:
| Q |
18 |
ctctatactataaatttcaggagaagtctagcaacttggcggacatggctagcaatgctgctcaatccgcaaaagaaaccgtgcaaggggttggaatttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896812 |
ctctatactataaatttcaggagaagtctagcaacttggcggacatggctagcaatgctgctcaatccgcaaaagaaaccgtgcaaggggttggaatttt |
5896713 |
T |
|
| Q |
118 |
catttcatcaacttgaatgctttg |
141 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5896712 |
catttcatcaacttgaatgctttg |
5896689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 5897189 - 5897120
Alignment:
| Q |
18 |
ctctatactataaatttcaggagaagtctagcaacttggcggacatggctagcaatgctgctcaatccgc |
87 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
5897189 |
ctctatactatgaatttcaggagaagtctagcaacttgacggacatggctagcaatgctgctcagtccgc |
5897120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 6272529 - 6272471
Alignment:
| Q |
36 |
aggagaagtctagcaacttggcggacatggctagcaatgctgctcaatccgcaaaagaa |
94 |
Q |
| |
|
|||| ||| ||||||||||| | |||| ||||||||||||||||||||| || |||||| |
|
|
| T |
6272529 |
aggaaaaggctagcaacttgaccgacaaggctagcaatgctgctcaatctgccaaagaa |
6272471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 6282417 - 6282467
Alignment:
| Q |
59 |
gacatggctagcaatgctgctcaatccgcaaaagaaaccgtgcaaggggtt |
109 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| |||| |||| |||| |
|
|
| T |
6282417 |
gacaaggctagcaatgctgctcaatctgcaaaagaatccgttcaagaggtt |
6282467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 6251224 - 6251257
Alignment:
| Q |
64 |
ggctagcaatgctgctcaatccgcaaaagaaacc |
97 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
6251224 |
ggctagcaatgctgctcaatccgcaaaggaaacc |
6251257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University