View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15046_high_11 (Length: 217)

Name: NF15046_high_11
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15046_high_11
NF15046_high_11
[»] chr3 (2 HSPs)
chr3 (19-97)||(54712492-54712572)
chr3 (160-200)||(54712646-54712686)
[»] chr1 (2 HSPs)
chr1 (25-97)||(41664166-41664238)
chr1 (160-200)||(41664389-41664429)
[»] chr5 (2 HSPs)
chr5 (54-97)||(32976738-32976781)
chr5 (160-200)||(32972531-32972571)
[»] chr4 (1 HSPs)
chr4 (37-77)||(31887946-31887985)


Alignment Details
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 54712492 - 54712572
Alignment:
Q  19 atgggatgggtaattagacatggacacccttttaattgtaccactcc--tatgtggcatggactttatagtattttcacac 97  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||| ||||    
T  54712492 atgggatgggtaattagacatggacaccctttttcttgtaccactcctatatgtggcatggactttatagtatttttacac 54712572  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 54712646 - 54712686
Alignment:
Q  160 catcctctttccttcatatcacacctctgggtaatgggttt 200  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  54712646 catcctctttctttcatgtcacacctctgggtaatgggttt 54712686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 41664166 - 41664238
Alignment:
Q  25 tgggtaattagacatggacacccttttaattgtaccactcctatgtggcatggactttatagtattttcacac 97  Q
    |||||||||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||||||||||    
T  41664166 tgggtaattagacatggacaccatttcttttgtaccactcctatgtggcatgggctttatagtattttcacac 41664238  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 41664389 - 41664429
Alignment:
Q  160 catcctctttccttcatatcacacctctgggtaatgggttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41664389 catcctctttccttcatatcacacctctgggtaatgggttt 41664429  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 32976781 - 32976738
Alignment:
Q  54 ttgtaccactcctatgtggcatggactttatagtattttcacac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32976781 ttgtaccactcctatgtggcatggactttatagtattttcacac 32976738  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 32972571 - 32972531
Alignment:
Q  160 catcctctttccttcatatcacacctctgggtaatgggttt 200  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  32972571 catcctctttccttcatatcacacctctgtgtaatgggttt 32972531  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 31887946 - 31887985
Alignment:
Q  37 catggacacccttttaattgtaccactcctatgtggcatgg 77  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  31887946 catggacacccttttatttgtaccac-cctatgtggcatgg 31887985  T

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