View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15046_high_3 (Length: 413)
Name: NF15046_high_3
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15046_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 80 - 397
Target Start/End: Original strand, 9439510 - 9439827
Alignment:
| Q |
80 |
gagggaattcgcaaaaattataagaagaaagtgggagagtggaagaggatctatcctaatggatttaaggatagaaaatgttgtatctgactctgcagag |
179 |
Q |
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| T |
9439510 |
gagggaattcgcaagaattatatgaagaaagtgggagagtggaagaggatctatcctaatggatttaaggatagaaaatgttgtatctgactctgcagag |
9439609 |
T |
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| Q |
180 |
taacctctggttttcttctacctttttcttactatccaaatactttctcactcctatgattcacaaatgcagttagtcaacctaatcatgtctccaaaaa |
279 |
Q |
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| T |
9439610 |
taacctctggttttcttctaccttttgcttactatccaaatactttgtcactcctatgattcacaaatgcagtttgcgaacataatcatgtctccaacaa |
9439709 |
T |
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| Q |
280 |
ataagatatgagtctagcttcataatgatacataaataagctactctacaaatgggacatgacccatatctaaccatggtttgaagtcttgattaagtaa |
379 |
Q |
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| T |
9439710 |
ataagatatgagtctagcttcataatgatacataaataagctactctacaaatgggacatgacccatatctaaccatggtttgaagtcttgattaagtaa |
9439809 |
T |
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| Q |
380 |
atggaacttggaaataat |
397 |
Q |
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| T |
9439810 |
atggaacttggaaataat |
9439827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 9439478 - 9439512
Alignment:
| Q |
7 |
ctgaaaagaattttagaccagatattccctcggag |
41 |
Q |
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| T |
9439478 |
ctgaaaagaattttagaccagatattccctcggag |
9439512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 9432185 - 9432237
Alignment:
| Q |
263 |
aatcatgtctccaaaaaataagatatgagtctagcttcataatgatacataaa |
315 |
Q |
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| T |
9432185 |
aatcatgtgtccaaaaaagaagatatgagtctatctcaataatgatacataaa |
9432237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 9420023 - 9420076
Alignment:
| Q |
263 |
aatcatgtctccaaaaaataagatatgagtctagcttcataatgatacataaat |
316 |
Q |
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| T |
9420023 |
aatcatgtgtccaaaaaagaagatatgagtctatctcaataatcatacataaat |
9420076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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