View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15046_high_6 (Length: 343)
Name: NF15046_high_6
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15046_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 52141478 - 52141163
Alignment:
| Q |
17 |
aaaagatttgttataaaatcaacaaatcagcataagaatgttgtttattctgaaaagnnnnnnnnnn-gaatgatattaattgtaagcaagaactgaaaa |
115 |
Q |
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| T |
52141478 |
aaaagatttgttataaaatcaacaaatcagcataagaatgttgtttattctgaaaagaaaaaaaaaaagaatgatattaattgtaagcaagaactgaaaa |
52141379 |
T |
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| Q |
116 |
gaaaccttggccatgagcttttcgtgttcttctgctcgtttcacgattttaacggcttgtttggaaatcatttgcttggtttgcacaacttgtttggaaa |
215 |
Q |
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| T |
52141378 |
gaaaccttggcgatgagcttttcgtgttcttctgctcgtttcacgattttaacggcttgtttggaaatcatttgcttggtttgcacaacttgtttggaaa |
52141279 |
T |
|
| Q |
216 |
tcaattccttcattgctgaactaggcttctgcattatcatattcatgcatgagttacttgaaatcattcaaatgaaaatgaatgttaaatacagttttta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52141278 |
tcaattccttcattgctgaactaggcttctgcattatcatattcatgcatgagttacttgatatcattcaaatgaaaatgaatgttaaatacagttttta |
52141179 |
T |
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| Q |
316 |
gttacctacttacctt |
331 |
Q |
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|||||||||||||||| |
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| T |
52141178 |
gttacctacttacctt |
52141163 |
T |
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