View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15046_high_9 (Length: 261)
Name: NF15046_high_9
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15046_high_9 |
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| [»] scaffold0726 (1 HSPs) |
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| [»] scaffold0557 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 45099293 - 45099472
Alignment:
| Q |
75 |
aagaagttttttgtatcatttgttaatatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgcattttttatacctta |
174 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | || ||||||||||||||||| |
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| T |
45099293 |
aagaagttttttagatcatttgttaatatacgtgatcatgttttaattgtcttttgtttattactgtcattattaatgttggtgcattttttataccttt |
45099392 |
T |
|
| Q |
175 |
ctaaatatatttggttaaatgtaac-aaaaatatgatttggttagtaaataa----aataagtgtgtgtttgtgtctgtg |
249 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||| |
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| T |
45099393 |
ctaaatatatttggttaaatgtaacaaaaaatatgattgggttagtaaataaagacaataagtatgtgtttgtgtctgtg |
45099472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 19110306 - 19110481
Alignment:
| Q |
75 |
aagaagttttttgtatcatttgttaatatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgcattttttatacctta |
174 |
Q |
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||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| | || ||||||||||||||||| |
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| T |
19110306 |
aagaatttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattattaatgttggtgcattttttataccttt |
19110405 |
T |
|
| Q |
175 |
ctaaatatatttggttaaatgtaac--aaaaatatgatttggttagtaaat----aaaataagtgtgtgtttgtgtctg |
247 |
Q |
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| T |
19110406 |
cta---atatatggttaaatgtaacaaaaaaatatgatttggttagtaaatgaagacaataagtgtgtgtttgtgtctg |
19110481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 12227791 - 12227944
Alignment:
| Q |
101 |
tatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgcattttttataccttactaaatatatttggttaaatgtaaca |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12227791 |
tatatgtgatcatgttttaattgtcttttgtttactaatgtcattattaatgttggtgcattttttatacctttctaaatatatttggttaaatgtaaca |
12227890 |
T |
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| Q |
201 |
aaa-atatgatttggttagtaaataa----aataagtgtgtgtttgtgtctgtg |
249 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
12227891 |
aaatatatgatttggttagtaaataaagacaataagtgtgtgtttgtgtatgtg |
12227944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 18717120 - 18716944
Alignment:
| Q |
75 |
aagaagttttttgtatcatttgttaatatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgcattttttatacctta |
174 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| | || ||||||||||||||||| |
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| T |
18717120 |
aagaagttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattattaatgttggtgcattttttataccttt |
18717021 |
T |
|
| Q |
175 |
ctaaatatatttggttaaatgtaac-aaaaatatgatttggttagtaaat----aaaataagtgtgtgtttgtgtctgtg |
249 |
Q |
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||| |||| ||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
18717020 |
cta---atatatggttaaatttaacaaaaaatatgatttggttagtaaatgaagacaataagtgtgtgtttgcgtctgtg |
18716944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 75 - 247
Target Start/End: Complemental strand, 14465287 - 14465113
Alignment:
| Q |
75 |
aagaagttttttgtatcatttgttaatatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgcattttttatacctta |
174 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| | || ||||||||||||||||| |
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| T |
14465287 |
aagaagttttttgggtcatttgttaatatacgtgatcattttttaattttcttttgtttactactgtcattattaatgttggtgcattttttataccttt |
14465188 |
T |
|
| Q |
175 |
ctaaatatatttggttaaatgtaac-aaaaatatgatttggttagtaaat----aaaataagtgtgtgtttgtgtctg |
247 |
Q |
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||| |||| |||| ||||||||| |||||||||||||||||||||||| | |||||||||||||||| ||||| |
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| T |
14465187 |
cta---atatatggtcaaatgtaacaaaaaatatgatttggttagtaaatgaagacaataagtgtgtgtttgagtctg |
14465113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 4053 - 4226
Alignment:
| Q |
78 |
aagttttttgtatcatttgttaatatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgcattttttataccttacta |
177 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| | || ||||||||||||||||| ||| |
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| T |
4053 |
aagttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattattaatgttggtgcattttttatacctttcta |
4152 |
T |
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| Q |
178 |
aatatatttggttaaatgtaac-aaaaatatgatttggttagtaaat----aaaataagtgtgtgtttgtgtctgtg |
249 |
Q |
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||||| |||| |||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
4153 |
---atattaggtttaatgtaacaaaaaatatgatttggttagtaaatgaagacagtaagtgtgtgtttgtgtctgtg |
4226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 7963114 - 7963291
Alignment:
| Q |
75 |
aagaagttttttgtatcatttgttaatatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgca-ttttttatacctt |
173 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| | || |||| ||||||||||||| |
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| T |
7963114 |
aagaagttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattattaatgttggtgcatttttttatacctt |
7963213 |
T |
|
| Q |
174 |
actaaatatatttggttaaatgtaac-aaaaatatgatttggttagtaaat----aaaataagtgtgtgtttgtgtctgtg |
249 |
Q |
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||| |||| |||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||| |
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| T |
7963214 |
tcta---atatatggttaaatgtaacaaaaaatatgatctggttagtaaatgaagacaataagtgtgtgtttgtgtctgtg |
7963291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 8271 - 8112
Alignment:
| Q |
92 |
atttgttaatatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgcattttttataccttactaaatatatttggtta |
191 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| | || ||||||||||| ||||| ||| |||| |||||| |
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| T |
8271 |
atttgttaatatacgtgatcattttttaattatcttttgtttactactgtcattattaatgttggtgcattttttacacctttcta---atatatggtta |
8175 |
T |
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| Q |
192 |
aatgtaac-aaaaatatgatttggttagtaaat----aaaataagtgtgtgtttgtgtctgtg |
249 |
Q |
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|||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
8174 |
aatgtaacaaaaaatatgatttggttagtaaatgaagacaataagtgtgtgtttgtgtctgtg |
8112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 81 - 249
Target Start/End: Original strand, 29466954 - 29467124
Alignment:
| Q |
81 |
ttttttgtatcatttgttaatatacgtgatcatgttttaattgtcttttgtttactattgtcattattaaagctgatgcattttttataccttactaaat |
180 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |||| | || ||||||||||||||||| || |
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| T |
29466954 |
ttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattgttaatgttggtgcattttttataccttttta--- |
29467050 |
T |
|
| Q |
181 |
atatttggttaaatgtaac-aaaaatatgatttggttagtaaat----aaaataagtgtgtgtttgtgtctgtg |
249 |
Q |
| |
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|||| ||||||||| |||| |||||||||||||| ||||||||| | ||||||||||| |||||||||||| |
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| T |
29467051 |
atatatggttaaatataacaaaaaatatgatttgattagtaaatgaagacaataagtgtgtttttgtgtctgtg |
29467124 |
T |
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