View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15046_low_12 (Length: 247)
Name: NF15046_low_12
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15046_low_12 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 45099187 - 45098960
Alignment:
| Q |
1 |
tgtattatgctatttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45099187 |
tgtattatgctatttgatgttaatatctttgtgtgaatcaattgtttactatattttaatttcaatcataaaaaatgagtaattgacagttgaaaataat |
45099088 |
T |
|
| Q |
101 |
tgaaaatttgaaatagatggtaattgaagtgagatgcacgttgttgaagaatagtcggttagtcaatgtttacaaatttatcgttaagacaacatgagat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45099087 |
tgaaaacttgaaatagatggtaattgaagtgagatgcacgttgttgaagaatagtcagttagtcaatgtttacaaatttatcgttaagataacatgagat |
45098988 |
T |
|
| Q |
201 |
tcttacaatcactggcatatgagtccct |
228 |
Q |
| |
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||| ||| || |||||||||||||||| |
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| T |
45098987 |
ccttccaaccattggcatatgagtccct |
45098960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 19110197 - 19109984
Alignment:
| Q |
13 |
tttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaa |
112 |
Q |
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|||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| |||||||||| |||| ||||||||||||||||||| | ||||| |
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| T |
19110197 |
tttgatgttaatat-tttgtatgaatcaattttttactatattttaatttcaatcacaaaaaatgagcaattgacagttgaaaataattgaacacttgaa |
19110099 |
T |
|
| Q |
113 |
atagatggtaattgaagtgagatgcacgttgttgaagaatagtcggttagtcaatgtttacaaatttatcgttaagacaacatgagattc-ttacaatca |
211 |
Q |
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| T |
19110098 |
atagatggtaatttaagtgagatgcacattgttgaagaatagtcact--atcaatgtttacaaatttatagttaagataatatgagatcctttagaacca |
19110001 |
T |
|
| Q |
212 |
ctggcatatgagtccct |
228 |
Q |
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|| ||||||||||||| |
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| T |
19110000 |
ttgtcatatgagtccct |
19109984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 18717243 - 18717428
Alignment:
| Q |
13 |
tttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaa |
112 |
Q |
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|||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||| |
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| T |
18717243 |
tttgatgttaatatttttgtgtgaatcaatttcttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaa |
18717342 |
T |
|
| Q |
113 |
atagatggtaattgaagtgagatgcacgttgttgaagaatagtcggttagtcaatgtttacaaatttatcgttaagacaacatgagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| || ||||||| |
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| T |
18717343 |
atagatggtaattgaagtgagatgcacgttgttgaagaatagtcact--atcaatgtttacaaatttatagttaagataatatgagat |
18717428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 14465404 - 14465501
Alignment:
| Q |
3 |
tattatgctatttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattg |
102 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||||||||| ||||||||||||||| | ||||||||||||||| |
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| T |
14465404 |
tattatgctatttgatgttaatatttttgtgtgaatca----tttattatattttaatttcaatcacaaaaaatgagtaattgatagttgaaaataattg |
14465499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 29466820 - 29466638
Alignment:
| Q |
14 |
ttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaaa |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||| |
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| T |
29466820 |
ttgatgttaatatttttgtgtgaatcaattttttact--attctaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacaattgaaa |
29466723 |
T |
|
| Q |
114 |
tagatggtaattgaagtgagatgcacgttgttgaagaatagtcggttagtcaatgtttacaaatttatcgttaagacaacatgagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| || ||||||| |
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| T |
29466722 |
tagatggtaattgaagtgagatgcacgttgttgaagaatagtcact--atcaatgtttacaaatttatagttaagataatatgagat |
29466638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 8412 - 8596
Alignment:
| Q |
13 |
tttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaa |
112 |
Q |
| |
|
|||||||||||||| ||| | |||||||||| |||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| | ||||| |
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| T |
8412 |
tttgatgttaatatttttatatgaatcaatt-tttactatattttaatttcaatcacaaaaaatgagtaattgatagttgaaaataattgaacacttgaa |
8510 |
T |
|
| Q |
113 |
atagatggtaattgaagtgagatgcacgttgttgaagaatagtcggttagtcaatgtttacaaatttatcgttaagacaacatgagat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| || ||||||| |
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| T |
8511 |
atagatggtaattgaagtgagatgcacgttgttgaagaatagtcact--atcaatgtttacaaatttatagttaagataatatgagat |
8596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 3926 - 3760
Alignment:
| Q |
13 |
tttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaa |
112 |
Q |
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|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| | ||||| |
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| T |
3926 |
tttgatgttaatatttttgtgtgaatcaattttttactatattttaatttcaatcacaaaaaattagtaattgacagttgaaaataattgaatacttgaa |
3827 |
T |
|
| Q |
113 |
atagatggtaattgaagtgagatgcacgttgttgaagaatagtcggttagtcaatgtttacaaatttat |
181 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||| |
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| T |
3826 |
atagatggtaattaaagtgagatgcacgttgttgaaaaatagtcact--atcaatgtttacaaatttat |
3760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 42956302 - 42956217
Alignment:
| Q |
93 |
aaaataattgaaaatttgaaatagatggtaattgaagtgagatgcacgttgttgaagaatagtcggttagtcaatgtttacaaattta |
180 |
Q |
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|||||||||||| | ||||||||| ||||||| ||||||||| |||||| |||||||| | || | ||||||||||||||||||| |
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| T |
42956302 |
aaaataattgaacacttgaaatagttggtaataaaagtgagatacacgttattgaagaacaatcaat--gtcaatgtttacaaattta |
42956217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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