View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15046_low_4 (Length: 406)

Name: NF15046_low_4
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15046_low_4
NF15046_low_4
[»] chr3 (2 HSPs)
chr3 (205-286)||(54712489-54712572)
chr3 (349-389)||(54712646-54712686)
[»] chr1 (5 HSPs)
chr1 (214-286)||(41664166-41664238)
chr1 (9-60)||(38240339-38240390)
chr1 (91-141)||(38240268-38240318)
chr1 (349-389)||(41664389-41664429)
chr1 (145-179)||(38235581-38235615)
[»] chr5 (2 HSPs)
chr5 (243-286)||(32976738-32976781)
chr5 (349-389)||(32972531-32972571)
[»] chr4 (1 HSPs)
chr4 (226-266)||(31887946-31887985)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 54712489 - 54712572
Alignment:
Q  205 aatatgggatgggtaattagacatggacacccttttaattgtaccactcc--tatgtggcatggactttatagtattttcacac 286  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||| ||||    
T  54712489 aatatgggatgggtaattagacatggacaccctttttcttgtaccactcctatatgtggcatggactttatagtatttttacac 54712572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 54712646 - 54712686
Alignment:
Q  349 catcctctttccttcatatcacacctctgggtaatgggttt 389  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  54712646 catcctctttctttcatgtcacacctctgggtaatgggttt 54712686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 41664166 - 41664238
Alignment:
Q  214 tgggtaattagacatggacacccttttaattgtaccactcctatgtggcatggactttatagtattttcacac 286  Q
    |||||||||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||||||||||    
T  41664166 tgggtaattagacatggacaccatttcttttgtaccactcctatgtggcatgggctttatagtattttcacac 41664238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 38240390 - 38240339
Alignment:
Q  9 gagatgaagcagtcgtagagaatgggcggagagagaggtaagtcacgatgaa 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38240390 gagatggagcagtcgtagagaatgggcggagagagaggtaagtcacgatgaa 38240339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 38240318 - 38240268
Alignment:
Q  91 aatctatcttaaatttaaccatgtcacattattttaaagtattcatgtcat 141  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  38240318 aatctatcttaagtttaaccatgtcacattagtttaaagtattcatgtcat 38240268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 41664389 - 41664429
Alignment:
Q  349 catcctctttccttcatatcacacctctgggtaatgggttt 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41664389 catcctctttccttcatatcacacctctgggtaatgggttt 41664429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 38235615 - 38235581
Alignment:
Q  145 atcagtgtgtacaaaggggtgtacaattaagagtg 179  Q
    |||||||||||||||||||||||||||||||||||    
T  38235615 atcagtgtgtacaaaggggtgtacaattaagagtg 38235581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 32976781 - 32976738
Alignment:
Q  243 ttgtaccactcctatgtggcatggactttatagtattttcacac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32976781 ttgtaccactcctatgtggcatggactttatagtattttcacac 32976738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 32972571 - 32972531
Alignment:
Q  349 catcctctttccttcatatcacacctctgggtaatgggttt 389  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  32972571 catcctctttccttcatatcacacctctgtgtaatgggttt 32972531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 31887946 - 31887985
Alignment:
Q  226 catggacacccttttaattgtaccactcctatgtggcatgg 266  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  31887946 catggacacccttttatttgtaccac-cctatgtggcatgg 31887985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University