View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15046_low_5 (Length: 401)
Name: NF15046_low_5
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15046_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 147 - 385
Target Start/End: Complemental strand, 51119888 - 51119638
Alignment:
| Q |
147 |
aaagttcattttcatgtcttcatcatcgtctttgacaaaccaaaaaacaaaactcagattcattaacaactgaaaacccaaattcaataataccatcaga |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51119888 |
aaagttcattttcatgtcttcatcatcgtctttgacaagccaaaaaacaaaattcagattcattaacaactgaaaacccaaattcaataataccatcaga |
51119789 |
T |
|
| Q |
247 |
ctaaaaga-ttnnnnnnntcaactttcatctcataaaactttaatggcgtctatgtttcagaattatattcttttctctctgtta-----------gatc |
334 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
51119788 |
ctaaaagatttaaaaaaatcaactttcatctcataaaactttaatgacgtctatgtttcacaattatattcttttctctctgttagatcaaactatgatc |
51119689 |
T |
|
| Q |
335 |
aaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatga |
385 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51119688 |
aaaatgcgcaacataagtgtttttcataataagctgtttcaagcaagatga |
51119638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 51120047 - 51119969
Alignment:
| Q |
5 |
cattccatgtgattattctgaaaaaatttcagcaagcatattatattaggcggctagtaaattacaattacaacccatg |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51120047 |
cattccatgtgattattctgaaaaaatttcagcaagcatattatattaggcggctagtaaattacaattacaacccatg |
51119969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 28964694 - 28964748
Alignment:
| Q |
331 |
gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatga |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
28964694 |
gatcaaaatgcgcaacataagtgcttttctagataagctgttttaagtaagatga |
28964748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 1663529 - 1663475
Alignment:
| Q |
331 |
gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatga |
385 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
1663529 |
gatcaatatgtgtaacataagtgcttttcagaataagctggtttaagcaagatga |
1663475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 12644692 - 12644646
Alignment:
| Q |
339 |
tgcgcaacataagtgcttttcataataagctgtttcaagcaagatga |
385 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||||| |||||||||| |
|
|
| T |
12644692 |
tgcgcaacataagtgcctttcaaaataagttgtttcgagcaagatga |
12644646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University