View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15046_low_8 (Length: 288)

Name: NF15046_low_8
Description: NF15046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15046_low_8
NF15046_low_8
[»] chr1 (2 HSPs)
chr1 (64-138)||(48976707-48976781)
chr1 (15-72)||(48976630-48976687)
[»] chr5 (3 HSPs)
chr5 (136-201)||(29287040-29287105)
chr5 (15-83)||(32119165-32119233)
chr5 (155-201)||(42946350-42946396)
[»] chr3 (2 HSPs)
chr3 (15-88)||(2213701-2213774)
chr3 (136-195)||(4553764-4553823)
[»] chr2 (1 HSPs)
chr2 (136-201)||(25119987-25120052)
[»] chr8 (3 HSPs)
chr8 (136-204)||(34215436-34215504)
chr8 (136-202)||(6762515-6762581)
chr8 (136-205)||(30863343-30863412)
[»] scaffold0150 (1 HSPs)
scaffold0150 (136-202)||(15122-15188)
[»] scaffold0018 (1 HSPs)
scaffold0018 (136-202)||(134295-134361)
[»] chr6 (2 HSPs)
chr6 (136-202)||(14658122-14658188)
chr6 (155-200)||(12756540-12756585)
[»] chr7 (1 HSPs)
chr7 (155-203)||(23036112-23036160)
[»] scaffold0623 (1 HSPs)
scaffold0623 (161-197)||(7181-7217)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 48976707 - 48976781
Alignment:
Q  64 ctttaaaacggtgcgtttcagagaggactccagagagaggagatcgaacaaattgatttggtaaaccaatttttt 138  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48976707 cttttaaacggtgcgtttcagagaggactccagagagaggggatcgaacaaattgatttggtaaaccaatttttt 48976781  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 48976630 - 48976687
Alignment:
Q  15 gaagagagtttgtgtctgtattttgtagaacggaaaccctttctttcagctttaaaac 72  Q
    |||||| |||||||| |||||||||| |||  ||||||||| |||| |||||||||||    
T  48976630 gaagagtgtttgtgtatgtattttgtggaatcgaaacccttccttttagctttaaaac 48976687  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 29287040 - 29287105
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgtagtagt 201  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  29287040 tttatagcgctttcatgttaaaagcgctatttaaggggcgttatattttctcaattttgtagtagt 29287105  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 32119165 - 32119233
Alignment:
Q  15 gaagagagtttgtgtctgtattttgtagaacggaaaccctttctttcagctttaaaacggtgcgtttca 83  Q
    |||||| |||||||||||||||| || ||||  ||||| |||||||| |||||| ||||||||||||||    
T  32119165 gaagagtgtttgtgtctgtatttagtggaaccaaaaccttttctttctgctttataacggtgcgtttca 32119233  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 42946350 - 42946396
Alignment:
Q  155 aaaagcgctatttaaggggcgctatattttctcaattttgtagtagt 201  Q
    ||||||| |||| ||| |||||||||||||| |||||||||||||||    
T  42946350 aaaagcgttattaaagtggcgctatattttcccaattttgtagtagt 42946396  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 2213774 - 2213701
Alignment:
Q  15 gaagagagtttgtgtctgtattttgtagaacggaaaccctttctttcagctttaaaacggtgcgtttcagagag 88  Q
    |||||| |||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  2213774 gaagagtgtttgtgtttgtattgtgtggaaccgaaaccctttctttcagctttaaaacggtgcgtttcaaagag 2213701  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 4553823 - 4553764
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgt 195  Q
    ||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  4553823 tttatagcgctttcatgtcaaaaacgttatttaaggggcgctgtattttctcaattttgt 4553764  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 25120052 - 25119987
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgtagtagt 201  Q
    ||||||| |||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  25120052 tttatagcgctttcatgttaaaagcgttatttatggggcactatattttctcaattttgtagtagt 25119987  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 34215436 - 34215504
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgtagtagtgta 204  Q
    ||||||| |||||  ||| |||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  34215436 tttatagcgctttagtgttaaaagcgctatttatgaggcgctatattttcccaattttgtagtagtgta 34215504  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 6762581 - 6762515
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgtagtagtg 202  Q
    ||||||| |||||  ||| |||||||||||||| | |||||||||||||| ||||||||||||||||    
T  6762581 tttatagcgctttagtgttaaaagcgctatttatgaggcgctatattttcccaattttgtagtagtg 6762515  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 30863412 - 30863343
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgtagtagtgtat 205  Q
    ||||||| ||||| |||| |||||||||| | | || ||||||||||||| |||||||||||||||||||    
T  30863412 tttatagcgcttttatgttaaaagcgctagtaatggagcgctatattttcccaattttgtagtagtgtat 30863343  T

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Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 15188 - 15122
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgtagtagtg 202  Q
    ||||||| ||||| |||| |||||||||||| | || ||||||||||||| ||||||||||||||||    
T  15188 tttatagcgcttttatgttaaaagcgctattaatggagcgctatattttcccaattttgtagtagtg 15122  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 134295 - 134361
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgtagtagtg 202  Q
    ||||||| |||||||||| |||||||||||| | || |||||||||||||  |||||||||||||||    
T  134295 tttatagcgctttcatgttaaaagcgctattaatggagcgctatattttcctaattttgtagtagtg 134361  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 14658122 - 14658188
Alignment:
Q  136 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaattttgtagtagtg 202  Q
    ||||||| |||||  ||| ||||||||||| || | |||||||||||||| ||||||||||||||||    
T  14658122 tttatagcgctttagtgttaaaagcgctatatatgaggcgctatattttcccaattttgtagtagtg 14658188  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 12756585 - 12756540
Alignment:
Q  155 aaaagcgctatttaaggggcgctatattttctcaattttgtagtag 200  Q
    |||||||||||||| | |||||||||||||| ||| ||||||||||    
T  12756585 aaaagcgctatttatgaggcgctatattttcccaaatttgtagtag 12756540  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 23036112 - 23036160
Alignment:
Q  155 aaaagcgctatttaaggggcgctatattttctcaattttgtagtagtgt 203  Q
    |||||||||||| | | |||||||||||||| |||||||||||||||||    
T  23036112 aaaagcgctattaatgaggcgctatattttcccaattttgtagtagtgt 23036160  T

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Target: scaffold0623 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 7181 - 7217
Alignment:
Q  161 gctatttaaggggcgctatattttctcaattttgtag 197  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  7181 gctattaaagaggcgctatattttctcaattttgtag 7217  T

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