View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15047_high_1 (Length: 637)
Name: NF15047_high_1
Description: NF15047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15047_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 567; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 9 - 636
Target Start/End: Complemental strand, 40785680 - 40785052
Alignment:
| Q |
9 |
gagcacagacaaaagaccggcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaataagggt |
108 |
Q |
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| T |
40785680 |
gagcaccgacaaaagaccggcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaacaagggt |
40785581 |
T |
|
| Q |
109 |
gtgatcacaaggagaagaagtaagatagagagaactataacttgagatttattaactttgttcatggtcatcttgataatagagaaagataaagggaatt |
208 |
Q |
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| T |
40785580 |
gtgatcacaaggagaagaagtaagatagagagaactataacttgagatttattaactttgttcatggtcatcttgataatagagaaagataaagggaatt |
40785481 |
T |
|
| Q |
209 |
agacttagtggtataggaaaaagtagtaggaagaataaaagcatgagaatgagtgtaggtttctagacatatatatagatgacataagggtagatggaag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
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| T |
40785480 |
agacttagtggtataggaaaaagtagtaggaagaataaaagcatgagaatgagtgtaggtttctagacatatatatagatgacataaaggtgggtggaag |
40785381 |
T |
|
| Q |
309 |
tgagagagttagagagacatatagtggaaattgttggttacatcattgttgtttgagaataagagttgttttactta--ttgggagtgttagtataatta |
406 |
Q |
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| T |
40785380 |
tgagagagttagagagacagatagtggaaattgttggttacatcattgttgtttgagaataagagttgttttacttattttgctagtgttagtataatta |
40785281 |
T |
|
| Q |
407 |
tggttgaatcaattgaactaattatatcatgatcaaagcttatatatccagtataaaggtaagtggcaatcaacaaacaaatcattgttaaaagagattg |
506 |
Q |
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| T |
40785280 |
tggttgaatcaattgaattaattatatcatgatcaaagcttatatatccagtataaaggtaagtggcaatcaacaaacaaatcattgttaaaagagattg |
40785181 |
T |
|
| Q |
507 |
tattcaggtggaattatggattgtagaaggaaacaagctaatacttgaggtcaattatttgtgagtgcctacctgatatgatacgagcaggtggatagct |
606 |
Q |
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| T |
40785180 |
tattcaggtggaattatggattgtagaaggaaacaagct-atacttgaggtcaattatttgtgagtgcctacctgatatgatatgagcaggtggatagct |
40785082 |
T |
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| Q |
607 |
aggctgttgattgataaaaatagttctcca |
636 |
Q |
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| T |
40785081 |
aggctgttgattcataaaaatagttctcca |
40785052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 40793416 - 40793265
Alignment:
| Q |
28 |
gcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaataagggtgtgatcacaaggagaagaa |
127 |
Q |
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| T |
40793416 |
gcttcagctccaagtgcaatgataaggaggttgaagattaagtaaaggtaactgggcctaagaaaagaaggtaagaagggtgtgatcacaaggagaaaag |
40793317 |
T |
|
| Q |
128 |
gtaagatagagagaactataacttgagatttattaactttgttcatggtcat |
179 |
Q |
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| T |
40793316 |
ctaggaaagagagaactattacttgagatttatcaactttgttcatggtcat |
40793265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 226 - 383
Target Start/End: Complemental strand, 40793183 - 40793026
Alignment:
| Q |
226 |
aaaaagtagtaggaagaataaaagcatgagaatgagtgtaggtttctagacat-atatatagatgacataagggtagatggaagtgagagagt--tagag |
322 |
Q |
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|||||||||||||||||| |||||||| || ||||||| | |||||||||| ||||||||| ||||||| ||| || || | |||||| ||||| |
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| T |
40793183 |
aaaaagtagtaggaagaa--aaagcatgggattgagtgtggtgttctagacattatatatagaggacataaaggtggaaagagatcagagagaagtagag |
40793086 |
T |
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| Q |
323 |
agacatatagtggaaattgttggttacatcattgttgtttgagaataagagttgttttact |
383 |
Q |
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| T |
40793085 |
agacaaatagtggaatttgttggttacatcattgtt-tttgagaataatagatattttact |
40793026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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