View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15047_high_2 (Length: 549)
Name: NF15047_high_2
Description: NF15047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15047_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 43094222 - 43094528
Alignment:
| Q |
24 |
gattgcgctgcattcttgtttgttgtagtttttacaaagaggaaaagagaaaataagagaataaaaggcgtaattttagttccaaacaaatgaaagctaa |
123 |
Q |
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| T |
43094222 |
gattgcgctgcattcttgtttgttgtagtttttgcaaagaggaaaagagaaaataagagaataaaaggcgtaattttagttccaaacaaatgaaagctaa |
43094321 |
T |
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| Q |
124 |
ttaaaatcaacgtcaagtatatattttattgaaactttgctaaaatacttatggttttgcgatgccaaccttttgtttttctacctaaaaactaatgatc |
223 |
Q |
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| T |
43094322 |
ttaaaatcaacgtcaagtatatattttattgaaactttgctaaaatacttatggttttgcgatgccaaccttttgtttttctacctaaaaactaatgatc |
43094421 |
T |
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| Q |
224 |
cgtgaaaattgtcatttgctctactacttttgttaagcatttcttatataaggtggtaataacattaattcacaattttactcaatgtatgtcaactatc |
323 |
Q |
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| T |
43094422 |
cgtgaaaaatgtcatttgctctactacttttgttaagcatttctcatat-aggtggtaataacattaatgcacaattttactcaatgtatgtcaactatc |
43094520 |
T |
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| Q |
324 |
acgtacca |
331 |
Q |
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|||||||| |
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| T |
43094521 |
acgtacca |
43094528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 402 - 537
Target Start/End: Original strand, 43094599 - 43094742
Alignment:
| Q |
402 |
caatggaaatgtattatgatttaatacacacacatatattttttatattgtcagtgaa---------tcatattattaaaaatgtttgactgtaatatat |
492 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43094599 |
caattgaaatgtattatgatttaatacacacacatatattttttatattgccagtgaaccatactcgtcatattattaaaaatgtttgactgtaatatat |
43094698 |
T |
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| Q |
493 |
aaatttttgaaagtcatatgtacgaggtttatcaacaatgcaaca |
537 |
Q |
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| T |
43094699 |
aaatttttgaaagtcata-gtacgaggtttatcaacaatgcaaca |
43094742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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