View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15047_high_3 (Length: 513)
Name: NF15047_high_3
Description: NF15047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15047_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 33770281 - 33770637
Alignment:
| Q |
10 |
gttatggttgattattcaattgagaaataattcaggatgcttgtgcttaccctaagttgcaaataagcttaaccgcctgttaacatcaagttttgcttat |
109 |
Q |
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| T |
33770281 |
gttatggttgattattcaattgagaaataattcaggatgcttgtgcttaccctaagttgcaaataagcttaaccgcctgttaacatcaagttttgcttat |
33770380 |
T |
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| Q |
110 |
cagtcattgtgcttttctgcacccgcgaaaccgggtgcgctaatctagaatacttatgctaatgaacatgagacagtataatgagtcaaaagaaacatat |
209 |
Q |
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| T |
33770381 |
cagtcattgtgtttttttgcacccgcgaaaccgggtgcgctaatctagaatacttatgctaatgaacatgagacagtataatgagtcaaaagaaacatat |
33770480 |
T |
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| Q |
210 |
ttcatttgataaactagataactatgtacaagggttggactaatcgatttgaccacattaagcacnnnnnnnnatcccttcgtaataacgaggaccaatg |
309 |
Q |
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| T |
33770481 |
ttcatttgataaactagataactatgtacaagggttggactaatcgatttgaccacattaagaac-tttttttatcccttcgtaataacgaggaccaatg |
33770579 |
T |
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| Q |
310 |
catcaggaagtagttttgcataaggtatatatcgcacttcaatgttgcccacaattga |
367 |
Q |
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| T |
33770580 |
catcaggaagtagttttgcataaggtatatatcgcacttcaatgttgcccacaattga |
33770637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 505
Target Start/End: Original strand, 33771503 - 33771590
Alignment:
| Q |
418 |
gcataaatgaataaaacaaagttgtgttttctaaacaagccagttacggtgtaaattgatttaaaagagtgatgatgtggaccaatgg |
505 |
Q |
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| T |
33771503 |
gcataaaagaagaaaacaaagttgtgttttctaaacaagccagttaccgtgtaaattgatttaaaagagtgatgatgtggatcaatgg |
33771590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 505
Target Start/End: Complemental strand, 44144350 - 44144256
Alignment:
| Q |
418 |
gcataaatgaataaaacaaagttgtgttttctaaac-------aagccagttacggtgtaaattgatttaaaagagtgatgatgtggaccaatgg |
505 |
Q |
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| T |
44144350 |
gcataaaagaagaaaacaaagttgtgttttccaaacctttgcaaagtcagttaccgtgtaaattgatttaaaagagtgatggtgtggaccaatgg |
44144256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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