View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15047_high_4 (Length: 480)

Name: NF15047_high_4
Description: NF15047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15047_high_4
NF15047_high_4
[»] chr3 (1 HSPs)
chr3 (27-322)||(49985359-49985654)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 49985654 - 49985359
Alignment:
Q  27 acttaacgaagccagaaccaaagggaacagatttttggcctaacgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaa 126  Q
    |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49985654 acttaacgaagccagaaccaaagggaacggattttgggcctaatgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaa 49985555  T
Q  127 tctgaagtctcactatcaacataatctgtgtctactacctctgactgtttcacaaaaccaaaactgaaaaagaaactttcagcgcttaaaacctctttcc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49985554 tctgaagtctcactatcaacataatctgtgtctactacctctgactgtttcacaaaaccaaaactgaaaaagaaactttcagcgcttaaaacctctttcc 49985455  T
Q  227 aaaacccttaatcactcatacactaattcaaaaataattcatacccaaccgttttccaaaaccccaatttcaaaacaagttatttttaacgaaagt 322  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49985454 aaaacccttaatcactcatgcactaattcaaaaataattcatacccaaccgttttccaaaaccccaatttcaaaacaagttatttttaacaaaagt 49985359  T

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