View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15047_high_5 (Length: 328)
Name: NF15047_high_5
Description: NF15047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15047_high_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 34 - 328
Target Start/End: Original strand, 49985040 - 49985334
Alignment:
| Q |
34 |
taaaaataaaaggtttgacttatcaaccaatatgacctgggcttgactcagacttaggtaggcccagccgcccacacgaaaagtataaataggacgcttg |
133 |
Q |
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| T |
49985040 |
taaaaataaaaggtttgacttatcaaccaatatgacatgggcttgactcagacttatgtaggcccagccgcccacacgaaaagtataaataggacgcttg |
49985139 |
T |
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| Q |
134 |
caattttaacggaaaatcaatccttgtattgtatcgcacacgaattcacattcagtcgcactttcatcgctggaatcaacttcaccttctttctgaacct |
233 |
Q |
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| T |
49985140 |
caattttaacggaacatcaatccttgtattgtatcgcacacgaattcacattcagtcgcacgttcatcgctggaatcaacttcaccttctttctgaacct |
49985239 |
T |
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| Q |
234 |
gtagtctcactatctctcgaactgaa-ttatcgactgnnnnnnnnctcttttattacattaataatctttctatgtttgtctattttctctgaacc |
328 |
Q |
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| T |
49985240 |
gtagtctcactatctctcaaactgaatttatcgactg-tttttttctcttttattacattaataatctttctatgtttgtctattttctctgaacc |
49985334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49984669 - 49984710
Alignment:
| Q |
1 |
atttaaatattaaaagaagtatgactttagtaataaaaataa |
42 |
Q |
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| T |
49984669 |
atttaaatattaaaagaagtatgactttagtaataaaaataa |
49984710 |
T |
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